hyginn
							
						 
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						42ad74b2f2
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							Changed 1 to 3
						
						
						
						
						
						
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						2020-09-23 14:13:52 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						cf90c52a61
					 | 
					
						
						
							
							Update the ScCC network data
						
						
						
						
						
						
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						2020-09-23 14:06:58 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						02e20ba812
					 | 
					
						
						
							
							Maintenance
						
						
						
						
						
						
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						2020-09-23 13:00:38 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						0e71fc337e
					 | 
					
						
						
							
							Maintenance and sample solutions
						
						
						
						
						
						
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						2020-09-23 06:07:40 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						4c0e75d792
					 | 
					
						
						
							
							Maintenance
						
						
						
						
						
						
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						2020-09-23 00:32:36 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						f90f581963
					 | 
					
						
						
							
							ToDo ...
						
						
						
						
						
						
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						2020-09-22 21:02:27 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						4c2e911a5a
					 | 
					
						
						
							
							2020 Maintenance
						
						
						
						
						
						
					 | 
					
						2020-09-22 21:02:13 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						ca0d78c4b9
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							stylisitc updates
						
						
						
						
						
						
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						2020-09-22 13:02:29 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						67c92a49d9
					 | 
					
						
						
							
							change validation logic in selectPDBrep() and add seal()
						
						
						
						
						
						
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						2020-09-22 13:02:10 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						03674b57dc
					 | 
					
						
						
							
							set to active and update submission tasks
						
						
						
						
						
						
					 | 
					
						2020-09-21 21:35:16 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						cfbfee9dba
					 | 
					
						
						
							
							add digest:: and jsonlite::, and sameSpecies(),
						
						
						
						
						
						
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						2020-09-21 21:34:45 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						b1d712891f
					 | 
					
						
						
							
							Set to active, and tweak subtitle
						
						
						
						
						
						
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						2020-09-21 15:23:27 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						12c11a6351
					 | 
					
						
						
							
							Update plot and legend layout
						
						
						
						
						
						
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						2020-09-21 15:06:27 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						2432d64f18
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							update process for moving .myProfile.R
						
						
						
						
						
						
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						2020-09-21 14:54:30 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						3082b05a0b
					 | 
					
						
						
							
							Moved setting default stringsAsFactors to .myProfile.R since it needs to persist
						
						
						
						
						
						
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						2020-09-21 14:44:08 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						61a2c01be4
					 | 
					
						
						
							
							add options(stringsAsFactors = FALSE) as comment - if needed
						
						
						
						
						
						
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						2020-09-21 14:40:04 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						7536473c5d
					 | 
					
						
						
							
							Updated MYSPE data and entire workflow. Changed all .RData to .rds
						
						
						
						
						
						
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						2020-09-21 14:28:24 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						3d91337e70
					 | 
					
						
						
							
							New workflow for Introduction
						
						
						
						
						
						
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						2020-09-19 22:31:06 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						37ef655d47
					 | 
					
						
						
							
							2020 updates - deactivate for maintenance
						
						
						
						
						
						
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						2020-09-18 21:56:30 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						89bdd14d1c
					 | 
					
						
						
							
							Test for default stringsAsFactors and complain if TRUE
						
						
						
						
						
						
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						2020-09-18 08:48:19 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						599f8a3f98
					 | 
					
						
						
							
							2020 updates and maintenance
						
						
						
						
						
						
					 | 
					
						2020-09-16 16:32:51 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						46a157bb17
					 | 
					
						
						
							
							Maintenance
						
						
						
						
						
						
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						2019-11-14 22:44:07 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						5b197b8829
					 | 
					
						
						
							
							Maintenance
						
						
						
						
						
						
					 | 
					
						2019-11-14 22:40:45 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						bae2d33f14
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							Prefix Biostrings:: to subseq()
						
						
						
						
						
						
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						2019-11-14 22:38:53 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						84aa2dca0b
					 | 
					
						
						
							
							prefix function with package name
						
						
						
						
						
						
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						2019-11-14 22:12:33 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						cffd803c23
					 | 
					
						
						
							
							Use requireNamespace(), <package>::<function>() idiom,
						
						
						
						
						
						
						
						Biocmanager:: - not biocLite() 
						
						
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						2019-01-08 17:11:25 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						8cdbb9f4cc
					 | 
					
						
						
							
							myScript.R should not exist in master
						
						
						
						
						
						
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						2019-01-08 11:32:39 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						c7393ca287
					 | 
					
						
						
							
							cleanup
						
						
						
						
						
						
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						2019-01-07 17:51:50 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						64772c5702
					 | 
					
						
						
							
							sample data
						
						
						
						
						
						
					 | 
					
						2019-01-07 17:51:11 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						6f54293592
					 | 
					
						
						
							
							Maintenance updates, and revised set.seed() usage
						
						
						
						
						
						
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						2019-01-07 16:17:23 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						2ab162e375
					 | 
					
						
						
							
							Maintance: typos, update of prosite URL
						
						
						
						
						
						
					 | 
					
						2018-12-02 18:52:36 +10:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
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						1dd87e7473
					 | 
					
						
						
							
							Maintainance fixes and UniProt API change bugfix
						
						
						
						
						
						
					 | 
					
						2018-10-30 21:27:42 -04:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						ead20d5f18
					 | 
					
						
						
							
							Fixed merge conflict noise
						
						
						
						
						
						
					 | 
					
						2018-01-28 18:53:10 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						c17b340b38
					 | 
					
						
						
							
							Add material
						
						
						
						
						
						
						
						Merge branch 'master' of https://github.com/hyginn/ABC-units
# Conflicts:
#	RPR-GEO2R.R 
						
						
					 | 
					
						2018-01-28 18:49:24 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						c4fed71a7f
					 | 
					
						
						
							
							Add section on GPL annotations to RPR-GEO2R
						
						
						
						
						
						
					 | 
					
						2018-01-28 18:47:15 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						b17a9e202a
					 | 
					
						
						
							
							Add section on GPL annotations to RPR-GEO2R
						
						
						
						
						
						
					 | 
					
						2018-01-28 18:23:21 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						359434d863
					 | 
					
						
						
							
							Typo
						
						
						
						
						
						
					 | 
					
						2017-11-23 07:19:31 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						75c6efe4a6
					 | 
					
						
						
							
							variable name typo
						
						
						
						
						
						
					 | 
					
						2017-11-23 00:32:13 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						8ac1582514
					 | 
					
						
						
							
							TRUE and FALSE were inverted in explanation of masking
						
						
						
						
						
						
					 | 
					
						2017-11-22 12:05:02 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						5e4ecbaf6f
					 | 
					
						
						
							
							New code - under development
						
						
						
						
						
						
					 | 
					
						2017-11-20 19:01:20 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
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								hyginn
							
						 
					 | 
					
						
						
							
						
						82841de74a
					 | 
					
						
						
							
							Change blockWidth > 60 from error to warning
						
						
						
						
						
						
					 | 
					
						2017-11-20 19:00:55 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						a1b5eb7b90
					 | 
					
						
						
							
							Correction re. Jeffreys' pseudocounts
						
						
						
						
						
						
					 | 
					
						2017-11-20 19:00:23 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						9a987c22be
					 | 
					
						
						
							
							Add comment re. failing msaMuscle()
						
						
						
						
						
						
					 | 
					
						2017-11-20 18:59:54 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						f747f7896e
					 | 
					
						
						
							
							typo
						
						
						
						
						
						
					 | 
					
						2017-11-17 23:44:05 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						450aefa119
					 | 
					
						
						
							
							New unit
						
						
						
						
						
						
					 | 
					
						2017-11-17 23:43:50 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						40b9e6fc04
					 | 
					
						
						
							
							update to function <- package::function idiom
						
						
						
						
						
						
					 | 
					
						2017-11-16 16:37:53 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						62a1a76558
					 | 
					
						
						
							
							Updated logic
						
						
						
						
						
						
					 | 
					
						2017-11-16 16:01:56 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						4bbf663eca
					 | 
					
						
						
							
							load seqinr
						
						
						
						
						
						
					 | 
					
						2017-11-16 14:46:15 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						a58e35f060
					 | 
					
						
						
							
							Fixed parsing and added missing logic
						
						
						
						
						
						
					 | 
					
						2017-11-16 11:47:53 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								hyginn
							
						 
					 | 
					
						
						
							
						
						206e2e14bb
					 | 
					
						
						
							
							New unit, and update to annotation file logic
						
						
						
						
						
						
					 | 
					
						2017-11-14 02:57:13 -05:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 |