ydeng/bch441-work-abc-units

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hyginn 5e4ecbaf6f New code - under development

2017-11-20 19:01:20 -05:00

data

fixed annotation errors

2017-11-14 02:56:39 -05:00

scripts

Change blockWidth > 60 from error to warning

2017-11-20 19:00:55 -05:00

tests

New unit: RPR-Unit_tests, with sample test file and tests directory

2017-10-15 18:46:42 -04:00

.gitignore

Update

2017-08-18 22:07:29 +02:00

.init.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

.Rprofile

Install files and folders

2017-08-18 22:04:01 +02:00

.tmp.R

Install files and folders

2017-08-18 22:04:01 +02:00

.utilities.R

add fetchMSAmotif() function

2017-11-01 09:43:48 -04:00

ABC-addSACCE_APSESproteins.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

ABC-units.R

Updates

2017-09-21 17:50:16 -04:00

ABC-units.Rproj

Install files and folders

2017-08-18 22:04:01 +02:00

BIN-ALI-BLAST.R

Fixed parsing and added missing logic

2017-11-16 11:47:53 -05:00

BIN-ALI-Dotplot.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

BIN-ALI-MSA.R

add fetchMSAmotif() function

2017-11-01 09:43:48 -04:00

BIN-ALI-Optimal_sequence_alignment.R

update to function <- package::function idiom

2017-11-16 16:37:53 -05:00

BIN-ALI-Similarity.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

BIN-Data_integration.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

BIN-FUNC-Domain_annotation.R

New unit, and update to annotation file logic

2017-11-14 02:57:13 -05:00

BIN-FUNC-Semantic_similarity.R

New unit

2017-11-13 00:51:04 -05:00

BIN-MYSPE.R

Updates for BIN-ALI-BLAST

2017-10-23 12:37:09 -04:00

BIN-PHYLO-Data_preparation.R

Add comment re. failing msaMuscle()

2017-11-20 18:59:54 -05:00

BIN-PHYLO-Tree_analysis.R

style fix

2017-11-09 23:43:48 -05:00

BIN-PHYLO-Tree_building.R

Updates, and add treedist()

2017-11-01 23:30:01 -04:00

BIN-PPI-Analysis.R

New unit and data

2017-11-09 23:44:25 -05:00

BIN-SEQA-Composition.R

New unit

2017-11-17 23:43:50 -05:00

BIN-Sequence.R

Update

2017-11-01 23:28:12 -04:00

BIN-Storing_data.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

FND-Genetic_code.R

typo

2017-11-17 23:44:05 -05:00

FND-MAT-Graphs_and_networks.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

FND-STA-Information_theory.R

New code - under development

2017-11-20 19:01:20 -05:00

FND-STA-Probability_distribution.R

Correction re. Jeffreys' pseudocounts

2017-11-20 19:00:23 -05:00

FND-STA-Significance.R

Correct calculation of empirical p-vale

2017-11-01 23:29:18 -04:00

functionTemplate.R

added a non-executing block for test code

2017-10-28 23:07:52 -04:00

README.md

Initial commit

2017-08-18 21:51:33 +02:00

RPR-Biostrings.R

Bugfixes

2017-11-03 15:20:16 -04:00

RPR-eUtils_XML.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

RPR-FASTA.R

Code and data for RPR-FASTA

2017-10-14 18:25:46 -04:00

RPR-Genetic_code_optimality.R

bugfixes

2017-10-29 22:19:19 -04:00

RPR-GEO2R.R

New unit and associated data

2017-11-12 04:39:00 -05:00

RPR-Introduction.R

Fixed typo

2017-10-03 10:40:22 -04:00

RPR-PROSITE_POST.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

RPR-RegEx.R

New unit - regex practice and sample file

2017-10-02 14:51:11 -04:00

RPR-SX-PDB.R

Added ToDo

2017-11-12 04:38:15 -05:00

RPR-UniProt_GET.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

RPR-Unit_testing.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

scriptTemplate.R

Added package information code after every library() call.

2017-10-28 23:07:04 -04:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units