ydeng/bch441-work-abc-units
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
107 Commits 1 Branch 0 Tags
3082b05a0b2d00f6befa7f68df3ec9e86a4195fd
Go to file
Clone
Open with VS Code Open with VSCodium Open with Intellij IDEA
Download ZIP Download TAR.GZ Download BUNDLE
hyginn 3082b05a0b Moved setting default stringsAsFactors to .myProfile.R since it needs to persist
2020-09-21 14:44:08 +10:00
data
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
myScripts
2020 updates and maintenance
2020-09-16 16:32:51 +10:00
scripts
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
tests
New unit: RPR-Unit_tests, with sample test file and tests directory
2017-10-15 18:46:42 -04:00
.gitignore
cleanup
2019-01-07 17:51:50 +10:00
.myProfile.R
Moved setting default stringsAsFactors to .myProfile.R since it needs to persist
2020-09-21 14:44:08 +10:00
.notes
cleanup
2019-01-07 17:51:50 +10:00
.Rprofile
Moved setting default stringsAsFactors to .myProfile.R since it needs to persist
2020-09-21 14:44:08 +10:00
.tmp.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
.utilities.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
ABC-addSACCE_APSESproteins.R
Added and updated learning units
2017-09-12 16:09:20 -04:00
ABC-units.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
ABC-units.Rproj
Install files and folders
2017-08-18 22:04:01 +02:00
BIN-ALI-BLAST.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-Dotplot.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-MSA.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-Optimal_sequence_alignment.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-Similarity.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-Data_integration.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-FUNC-Domain_annotation.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-FUNC-Semantic_similarity.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-MYSPE.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
BIN-PHYLO-Data_preparation.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-PHYLO-Tree_analysis.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
BIN-PHYLO-Tree_building.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
BIN-PPI-Analysis.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
BIN-SEQA-Composition.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-Sequence.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-Storing_data.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-Genetic_code.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-MAT-Graphs_and_networks.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-STA-Information_theory.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-STA-Probability_distribution.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-STA-Significance.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
functionTemplate.R
added a non-executing block for test code
2017-10-28 23:07:52 -04:00
README.md
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Biostrings.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
RPR-eUtils_XML.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-FASTA.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Genetic_code_optimality.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-GEO2R.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
RPR-Introduction.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
RPR-PROSITE_POST.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-RegEx.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-SX-PDB.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-UniProt_GET.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Unit_testing.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
scriptTemplate.R
Use requireNamespace(), <package>::<function>() idiom,
2019-01-08 17:11:25 +10:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units

Follow the instructions in the learning unit to install your local copy of this R-project.

Description
No description provided
Readme 7.6 MiB
Languages
R 100%