ydeng/bch441-work-abc-units
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
88 Commits 1 Branch 0 Tags 7.6 MiB
R 100%
c17b340b38
Go to file
hyginn c17b340b38 Add material 
Merge branch 'master' of https://github.com/hyginn/ABC-units

# Conflicts:
#	RPR-GEO2R.R
2018-01-28 18:49:24 -05:00
data fixed annotation errors 2017-11-14 02:56:39 -05:00
scripts Change blockWidth > 60 from error to warning 2017-11-20 19:00:55 -05:00
tests New unit: RPR-Unit_tests, with sample test file and tests directory 2017-10-15 18:46:42 -04:00
.gitignore Update 2017-08-18 22:07:29 +02:00
.init.R Changing "YFO" to "MYSPE" 2017-10-03 23:38:48 -04:00
.Rprofile Install files and folders 2017-08-18 22:04:01 +02:00
.tmp.R Install files and folders 2017-08-18 22:04:01 +02:00
.utilities.R add fetchMSAmotif() function 2017-11-01 09:43:48 -04:00
ABC-addSACCE_APSESproteins.R Added and updated learning units 2017-09-12 16:09:20 -04:00
ABC-units.R Updates 2017-09-21 17:50:16 -04:00
ABC-units.Rproj Install files and folders 2017-08-18 22:04:01 +02:00
BIN-ALI-BLAST.R Fixed parsing and added missing logic 2017-11-16 11:47:53 -05:00
BIN-ALI-Dotplot.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
BIN-ALI-MSA.R Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:47:15 -05:00
BIN-ALI-Optimal_sequence_alignment.R update to function <- package::function idiom 2017-11-16 16:37:53 -05:00
BIN-ALI-Similarity.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
BIN-Data_integration.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
BIN-FUNC-Domain_annotation.R New unit, and update to annotation file logic 2017-11-14 02:57:13 -05:00
BIN-FUNC-Semantic_similarity.R New unit 2017-11-13 00:51:04 -05:00
BIN-MYSPE.R Updates for BIN-ALI-BLAST 2017-10-23 12:37:09 -04:00
BIN-PHYLO-Data_preparation.R TRUE and FALSE were inverted in explanation of masking 2017-11-22 12:05:02 -05:00
BIN-PHYLO-Tree_analysis.R variable name typo 2017-11-23 00:32:13 -05:00
BIN-PHYLO-Tree_building.R Typo 2017-11-23 07:19:31 -05:00
BIN-PPI-Analysis.R New unit and data 2017-11-09 23:44:25 -05:00
BIN-SEQA-Composition.R New unit 2017-11-17 23:43:50 -05:00
BIN-Sequence.R Update 2017-11-01 23:28:12 -04:00
BIN-Storing_data.R Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:47:15 -05:00
FND-Genetic_code.R typo 2017-11-17 23:44:05 -05:00
FND-MAT-Graphs_and_networks.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
FND-STA-Information_theory.R New code - under development 2017-11-20 19:01:20 -05:00
FND-STA-Probability_distribution.R Correction re. Jeffreys' pseudocounts 2017-11-20 19:00:23 -05:00
FND-STA-Significance.R Correct calculation of empirical p-vale 2017-11-01 23:29:18 -04:00
functionTemplate.R added a non-executing block for test code 2017-10-28 23:07:52 -04:00
README.md Initial commit 2017-08-18 21:51:33 +02:00
RPR-Biostrings.R Bugfixes 2017-11-03 15:20:16 -04:00
RPR-eUtils_XML.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
RPR-FASTA.R Code and data for RPR-FASTA 2017-10-14 18:25:46 -04:00
RPR-Genetic_code_optimality.R bugfixes 2017-10-29 22:19:19 -04:00
RPR-GEO2R.R Add material 2018-01-28 18:49:24 -05:00
RPR-Introduction.R Fixed typo 2017-10-03 10:40:22 -04:00
RPR-PROSITE_POST.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
RPR-RegEx.R New unit - regex practice and sample file 2017-10-02 14:51:11 -04:00
RPR-SX-PDB.R Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:47:15 -05:00
RPR-UniProt_GET.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
RPR-Unit_testing.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00
scriptTemplate.R Added package information code after every library() call. 2017-10-28 23:07:04 -04:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units