Commit Graph

222 Commits

Author SHA1 Message Date
hyginn
76b18a8a35 Update PPI-Analysis assets and code 2020-09-23 20:47:26 +10:00
hyginn
42ad74b2f2 Changed 1 to 3 2020-09-23 14:13:52 +10:00
hyginn
cf90c52a61 Update the ScCC network data 2020-09-23 14:06:58 +10:00
hyginn
02e20ba812 Maintenance 2020-09-23 13:00:38 +10:00
hyginn
0e71fc337e Maintenance and sample solutions 2020-09-23 06:07:40 +10:00
hyginn
4c0e75d792 Maintenance 2020-09-23 00:32:36 +10:00
hyginn
f90f581963 ToDo ... 2020-09-22 21:02:27 +10:00
hyginn
4c2e911a5a 2020 Maintenance 2020-09-22 21:02:13 +10:00
hyginn
ca0d78c4b9 stylisitc updates 2020-09-22 13:02:29 +10:00
hyginn
67c92a49d9 change validation logic in selectPDBrep() and add seal() 2020-09-22 13:02:10 +10:00
hyginn
03674b57dc set to active and update submission tasks 2020-09-21 21:35:16 +10:00
hyginn
cfbfee9dba add digest:: and jsonlite::, and sameSpecies(), 2020-09-21 21:34:45 +10:00
hyginn
b1d712891f Set to active, and tweak subtitle 2020-09-21 15:23:27 +10:00
hyginn
12c11a6351 Update plot and legend layout 2020-09-21 15:06:27 +10:00
hyginn
2432d64f18 update process for moving .myProfile.R 2020-09-21 14:54:30 +10:00
hyginn
3082b05a0b Moved setting default stringsAsFactors to .myProfile.R since it needs to persist 2020-09-21 14:44:08 +10:00
hyginn
61a2c01be4 add options(stringsAsFactors = FALSE) as comment - if needed 2020-09-21 14:40:04 +10:00
hyginn
7536473c5d Updated MYSPE data and entire workflow. Changed all .RData to .rds 2020-09-21 14:28:24 +10:00
hyginn
3d91337e70 New workflow for Introduction 2020-09-19 22:31:06 +10:00
hyginn
37ef655d47 2020 updates - deactivate for maintenance 2020-09-18 21:56:30 +10:00
hyginn
89bdd14d1c Test for default stringsAsFactors and complain if TRUE 2020-09-18 08:48:19 +10:00
hyginn
599f8a3f98 2020 updates and maintenance 2020-09-16 16:32:51 +10:00
hyginn
46a157bb17 Maintenance 2019-11-14 22:44:07 -05:00
hyginn
5b197b8829 Maintenance 2019-11-14 22:40:45 -05:00
hyginn
bae2d33f14 Prefix Biostrings:: to subseq() 2019-11-14 22:38:53 -05:00
hyginn
84aa2dca0b prefix function with package name 2019-11-14 22:12:33 -05:00
hyginn
cffd803c23 Use requireNamespace(), <package>::<function>() idiom,
Biocmanager:: - not biocLite()
2019-01-08 17:11:25 +10:00
hyginn
8cdbb9f4cc myScript.R should not exist in master 2019-01-08 11:32:39 +10:00
hyginn
c7393ca287 cleanup 2019-01-07 17:51:50 +10:00
hyginn
64772c5702 sample data 2019-01-07 17:51:11 +10:00
hyginn
6f54293592 Maintenance updates, and revised set.seed() usage 2019-01-07 16:17:23 +10:00
hyginn
2ab162e375 Maintance: typos, update of prosite URL 2018-12-02 18:52:36 +10:00
hyginn
1dd87e7473 Maintainance fixes and UniProt API change bugfix 2018-10-30 21:27:42 -04:00
hyginn
ead20d5f18 Fixed merge conflict noise 2018-01-28 18:53:10 -05:00
hyginn
c17b340b38 Add material
Merge branch 'master' of https://github.com/hyginn/ABC-units

# Conflicts:
#	RPR-GEO2R.R
2018-01-28 18:49:24 -05:00
hyginn
c4fed71a7f Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:47:15 -05:00
hyginn
b17a9e202a Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:23:21 -05:00
hyginn
359434d863 Typo 2017-11-23 07:19:31 -05:00
hyginn
75c6efe4a6 variable name typo 2017-11-23 00:32:13 -05:00
hyginn
8ac1582514 TRUE and FALSE were inverted in explanation of masking 2017-11-22 12:05:02 -05:00
hyginn
5e4ecbaf6f New code - under development 2017-11-20 19:01:20 -05:00
hyginn
82841de74a Change blockWidth > 60 from error to warning 2017-11-20 19:00:55 -05:00
hyginn
a1b5eb7b90 Correction re. Jeffreys' pseudocounts 2017-11-20 19:00:23 -05:00
hyginn
9a987c22be Add comment re. failing msaMuscle() 2017-11-20 18:59:54 -05:00
hyginn
f747f7896e typo 2017-11-17 23:44:05 -05:00
hyginn
450aefa119 New unit 2017-11-17 23:43:50 -05:00
hyginn
40b9e6fc04 update to function <- package::function idiom 2017-11-16 16:37:53 -05:00
hyginn
62a1a76558 Updated logic 2017-11-16 16:01:56 -05:00
hyginn
4bbf663eca load seqinr 2017-11-16 14:46:15 -05:00
hyginn
a58e35f060 Fixed parsing and added missing logic 2017-11-16 11:47:53 -05:00