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f8d92a4aad
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Added predetermined headers feature
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-14 14:26:43 +00:00 |
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481870db97
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Updated tests to reflect new fasta read naming
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-13 14:25:44 +00:00 |
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3d6f36a722
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Added test for non-exact allele matches
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-28 15:05:26 +00:00 |
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bbd9e67c8c
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Added test to check CSV name is not repeated
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-26 07:10:44 +00:00 |
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4b34036d17
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Fixed concurrent profile_multiple_strings implementation
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-26 05:16:24 +00:00 |
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27ae89fde7
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Replaced schema with scheme
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-26 04:50:54 +00:00 |
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7384895578
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Writing now uses named MLST profile
automlst.engine/pipeline/head This commit looks good
automlst.engine/pipeline/tag This commit looks good
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2025-02-18 16:03:17 +00:00 |
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d0318536b2
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Changed FASTA reading to group based on file for merging partial targets
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2025-02-14 14:35:53 +00:00 |
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765cf9d418
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:53:25 +00:00 |
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1c3f7f9ed8
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Removed test for instantiating local MLST profiler
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2025-02-12 17:46:55 +00:00 |
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e4ddaf2e8c
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Changed to a MLST typable sequence for pubMLST tests
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2025-02-12 17:43:26 +00:00 |
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36bca1b70d
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:02:22 +00:00 |
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09a693b696
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Removed features being worked on in separate branch
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2025-02-12 17:02:00 +00:00 |
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f76bf86ef6
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Fixed bad profile for H. influenzae non-exact test case
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2025-02-12 16:59:50 +00:00 |
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a60daf3ee2
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Updated H. influenzae database API url
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2025-02-12 16:39:13 +00:00 |
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fbfd993269
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Copied tests over from CSV tests and updated to reflect current code base
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2025-02-12 16:36:59 +00:00 |
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7fb3eab5b6
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Added pubMLST test case to bigsdb tests and updated to reflect codebase changes
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2025-02-12 15:53:14 +00:00 |
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b4845fab34
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Added automatic handling of strings instead of arrays of sequences to typing
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2025-02-06 21:15:50 +00:00 |
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fe999f1cab
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Added a unit test for multithreaded alignments
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2025-02-06 18:01:50 +00:00 |
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85946eb110
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Fixed match metric difference between remote and local
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2025-02-06 17:12:31 +00:00 |
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ff8a1aff08
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Implemented annotated local typing method without testing
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2025-02-04 16:19:00 +00:00 |
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3e3898334f
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Began implementing LazyPersistentCachedBIGSdbMLSTProfiler
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2025-01-27 22:03:49 +00:00 |
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1773bb9dcb
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Updated naming (again).
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2025-01-22 21:05:19 +00:00 |
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53e74af20a
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Refactoring project name to autoBIGSst.engine
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2025-01-22 18:24:04 +00:00 |
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b89f24a3fa
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Fixed issue where multiple allele identifiers were not returned in output.
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2025-01-17 17:04:22 +00:00 |
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e7c8c5bcf9
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Changed allele CSV output to non-lists
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2025-01-17 16:56:52 +00:00 |
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7ea7ead46a
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Moved ABIF code to separate project
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2025-01-17 14:27:25 +00:00 |
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a3c864b565
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Refactored code layout
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2025-01-16 21:54:52 +00:00 |
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f20a656f45
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Fixed multiple string typing failure handling
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2025-01-10 16:00:27 +00:00 |
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0c0a2c9d4c
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Finished adding partial allele matching
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2025-01-10 15:25:31 +00:00 |
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03fbbe542e
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allele profiling partial matching works
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2025-01-09 21:44:28 +00:00 |
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9589761ddd
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Now tracks failed profilings
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2025-01-09 17:27:15 +00:00 |
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2843d0d592
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Added tests to test continuous MLST despite failure
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2025-01-09 17:04:53 +00:00 |
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d4f890a150
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Added specific tests for BIGSdbIndex
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2025-01-09 16:23:42 +00:00 |
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2c412c5526
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Renamed tests subdirectory to mirror source
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2025-01-09 15:00:46 +00:00 |
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42d0f56b18
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Moved to a general BIGSdb implementation
Updated tests
Removed ABIF UI for the time being
Began updating CLI
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2025-01-08 21:32:10 +00:00 |
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645357ac58
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Added unit tests for pubMLST MLST profiling
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2025-01-08 17:34:30 +00:00 |
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d580402523
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began adding PubMLST support
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2025-01-08 16:54:57 +00:00 |
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ad28d9bf20
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Added additional test for fully automatic typing based on sequence
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2025-01-08 16:31:06 +00:00 |
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c3a492fa8f
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restructured MLST profiling classes
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2025-01-08 16:24:42 +00:00 |
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e93296705d
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Removed corresponding test
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2025-01-08 15:15:32 +00:00 |
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02985d5e37
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Copied over most code from another of my projects
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2025-01-08 15:14:06 +00:00 |
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