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2920ba95ee
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Increased default timeout
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0.14.2
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2025-03-14 16:48:16 +00:00 |
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14d760a266
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Added optional parameter to change timeout
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0.14.1
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2025-03-14 16:09:01 +00:00 |
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f8d92a4aad
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Added predetermined headers feature
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0.14.0
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2025-03-14 14:26:43 +00:00 |
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34bf02c75a
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Increased timeout to 5 minutes
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0.13.2
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2025-03-13 18:37:33 +00:00 |
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3cb10a4609
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Added client error as acceptable exception
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2025-03-13 18:13:38 +00:00 |
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1776f5aa51
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Fixed exception syntax
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2025-03-13 16:51:15 +00:00 |
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96d715fdcb
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Added a server disconnect error catch
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2025-03-13 16:27:59 +00:00 |
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e088d1080b
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Added functionality to retry determining ST
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2025-03-13 16:13:14 +00:00 |
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8ffc7c7fb5
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Added retry functionality for allele variant determination
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2025-03-13 15:54:35 +00:00 |
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af7edf0942
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Changed development server publication condition
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0.13.1
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2025-03-13 14:37:16 +00:00 |
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481870db97
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Updated tests to reflect new fasta read naming
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2025-03-13 14:25:44 +00:00 |
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62fdada9c1
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Added original filename to csv output
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2025-03-13 14:17:08 +00:00 |
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3074997db6
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Removed unused file
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2025-03-13 14:01:00 +00:00 |
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3d6f36a722
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Added test for non-exact allele matches
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2025-02-28 15:05:26 +00:00 |
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bbd9e67c8c
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Added test to check CSV name is not repeated
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2025-02-26 07:10:44 +00:00 |
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2ea2f63f29
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Pipeline will now only publish to git.reslate.systems on main branch
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0.13.0
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2025-02-26 06:31:53 +00:00 |
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17932ecd71
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Alleles IDs obtained from one sequence is named the ID of that sequence
autoBIGS.engine/pipeline/head There was a failure building this commit
Instead of generating a tuple comprised of the one sequence ID repeated
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2025-02-26 06:15:56 +00:00 |
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6cdc4ff4ae
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Merge branch 'develop'
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2025-02-26 05:26:12 +00:00 |
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4b34036d17
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Fixed concurrent profile_multiple_strings implementation
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2025-02-26 05:16:24 +00:00 |
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27ae89fde7
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Replaced schema with scheme
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2025-02-26 04:50:54 +00:00 |
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06dbb56c28
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Revert "Recipe meta.yaml also archived as artifact"
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This reverts commit 79fcce8b8401554f69376f79787a786e5a97f31c.
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2025-02-21 06:34:59 +00:00 |
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79fcce8b84
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Recipe meta.yaml also archived as artifact
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2025-02-21 06:22:27 +00:00 |
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f4064f087e
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Fixed typos in pipeline script
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2025-02-21 06:12:35 +00:00 |
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276665f5fd
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Added curl to environment requirements
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2025-02-21 06:01:39 +00:00 |
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fd536862e2
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Twine version specified to 6.0.1 to avoid Twine issue 15611
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2025-02-21 05:53:08 +00:00 |
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576dc303f4
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Changed requested kubernetes container to be miniforge
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2025-02-21 05:52:34 +00:00 |
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2822a483e3
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Initial attempt at switching to a conda based build environment
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2025-02-21 05:37:56 +00:00 |
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b8cebb8ba4
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Infrastructure for concurrent processing implemented
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2025-02-19 15:49:46 +00:00 |
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62ce1c9b2f
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Updated README.md to explain versioning
automlst.engine/pipeline/head This commit looks good
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2025-02-18 16:32:02 +00:00 |
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7384895578
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Writing now uses named MLST profile
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0.12.0
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2025-02-18 16:03:17 +00:00 |
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5a03c7e8d8
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Multiple string profiling now respects grouped queries (for non-WGS)
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2025-02-18 15:34:18 +00:00 |
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ddf9cde175
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Added a license text to pyproject.toml
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2025-02-14 20:47:06 +00:00 |
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2e8cdd8da9
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Updated URL links
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0.11.1
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2025-02-14 20:37:13 +00:00 |
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d0318536b2
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Changed FASTA reading to group based on file for merging partial targets
0.11.0
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2025-02-14 14:35:53 +00:00 |
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765cf9d418
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
0.10.0
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2025-02-12 17:53:25 +00:00 |
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348c3d00b4
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Updated README.md to be more clear
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2025-02-12 17:52:53 +00:00 |
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1c3f7f9ed8
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Removed test for instantiating local MLST profiler
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2025-02-12 17:46:55 +00:00 |
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e4ddaf2e8c
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Changed to a MLST typable sequence for pubMLST tests
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2025-02-12 17:43:26 +00:00 |
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73aade2bde
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:07:51 +00:00 |
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af8590baa7
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Removed import of deleted feature
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2025-02-12 17:07:10 +00:00 |
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36bca1b70d
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:02:22 +00:00 |
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09a693b696
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Removed features being worked on in separate branch
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2025-02-12 17:02:00 +00:00 |
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f76bf86ef6
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Fixed bad profile for H. influenzae non-exact test case
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2025-02-12 16:59:50 +00:00 |
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a60daf3ee2
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Updated H. influenzae database API url
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2025-02-12 16:39:13 +00:00 |
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fbfd993269
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Copied tests over from CSV tests and updated to reflect current code base
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2025-02-12 16:36:59 +00:00 |
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ba606c35a9
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conversion of collection of alleles to map now produces results with tuples instead of lists
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2025-02-12 16:36:31 +00:00 |
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4183840ba0
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Added notation to indicate inexact matching in CSV
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2025-02-12 15:59:19 +00:00 |
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7fb3eab5b6
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Added pubMLST test case to bigsdb tests and updated to reflect codebase changes
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2025-02-12 15:53:14 +00:00 |
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175a51f968
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Replaced local profiler with a not implemented exception
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2025-02-12 15:52:48 +00:00 |
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897f7ee922
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Merge branch 'develop' into features/local-typing
automlst.engine/pipeline/head Something is wrong with the build of this commit
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2025-02-12 15:01:12 +00:00 |
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