Removed features being worked on in separate branch

tests/autobigs/engine/analysis/test_aligners.py

@@ -1,42 +0,0 @@
-from Bio import SeqIO
-from Bio.Align import PairwiseAligner
-from pytest import mark
-from pytest import fixture
-from autobigs.engine.analysis.aligners import AsyncBiopythonPairwiseAlignmentEngine
-from autobigs.engine.structures.alignment import PairwiseAlignment
-
-@fixture
-def tohamaI_bpertussis_adk():
-    return str(SeqIO.read("tests/resources/tohama_I_bpertussis_adk.fasta", format="fasta").seq)
-
-@fixture
-def tohamaI_bpertussis_genome():
-    return str(SeqIO.read("tests/resources/tohama_I_bpertussis.fasta", format="fasta").seq)
-
-@fixture
-def fdaargos_1560_hinfluenza_adk():
-    return str(SeqIO.read("tests/resources/fdaargos_1560_hinfluenza_adk.fasta", format="fasta").seq)
-
-@fixture
-def fdaargos_1560_hinfluenza_genome():
-    return str(SeqIO.read("tests/resources/fdaargos_1560_hinfluenza.fasta", format="fasta").seq)
-
-
-@fixture(params=[1, 2])
-def dummy_engine(request):
-    aligner = PairwiseAligner("blastn")
-    aligner.mode = "local"
-    with AsyncBiopythonPairwiseAlignmentEngine(aligner, request.param) as engine:
-        yield engine
-
-class TestAsyncPairwiseAlignmentEngine:
-    async def test_single_alignment_no_errors_single_alignment(self, tohamaI_bpertussis_genome, tohamaI_bpertussis_adk: str, dummy_engine: AsyncBiopythonPairwiseAlignmentEngine):
-        dummy_engine.align(tohamaI_bpertussis_genome, tohamaI_bpertussis_adk)
-        async for alignment, additional_information in dummy_engine:
-            assert isinstance(alignment, PairwiseAlignment)
-
-    async def test_single_alignment_no_errors_multiple(self, tohamaI_bpertussis_genome, tohamaI_bpertussis_adk, fdaargos_1560_hinfluenza_genome, fdaargos_1560_hinfluenza_adk, dummy_engine: AsyncBiopythonPairwiseAlignmentEngine):
-        dummy_engine.align(tohamaI_bpertussis_genome, tohamaI_bpertussis_adk)
-        dummy_engine.align(fdaargos_1560_hinfluenza_genome, fdaargos_1560_hinfluenza_adk)
-        async for alignment, additional_information in dummy_engine:
-            assert isinstance(alignment, PairwiseAlignment)