Updated naming (again).

This commit is contained in:
2025-01-22 21:05:19 +00:00
parent 1372141b57
commit 1773bb9dcb
17 changed files with 20 additions and 20 deletions

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@@ -1,5 +1,5 @@
from autobigsst.engine.data.local.csv import dict_loci_alleles_variants_from_loci
from autobigsst.engine.data.structures.mlst import Allele
from autobigs.engine.data.local.csv import dict_loci_alleles_variants_from_loci
from autobigs.engine.data.structures.mlst import Allele
def test_dict_loci_alleles_variants_from_loci_single_loci_not_list():

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@@ -1,4 +1,4 @@
from autobigsst.engine.data.local.fasta import read_fasta
from autobigs.engine.data.local.fasta import read_fasta
async def test_fasta_reader_not_none():

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@@ -3,10 +3,10 @@ import re
from typing import Collection, Sequence, Union
from Bio import SeqIO
import pytest
from autobigsst.engine.data.structures.genomics import NamedString
from autobigsst.engine.data.structures.mlst import Allele, MLSTProfile
from autobigsst.engine.exceptions.database import NoBIGSdbExactMatchesException, NoBIGSdbMatchesException
from autobigsst.engine.data.remote.databases.bigsdb import BIGSdbIndex, BIGSdbMLSTProfiler
from autobigs.engine.data.structures.genomics import NamedString
from autobigs.engine.data.structures.mlst import Allele, MLSTProfile
from autobigs.engine.exceptions.database import NoBIGSdbExactMatchesException, NoBIGSdbMatchesException
from autobigs.engine.data.remote.databases.bigsdb import BIGSdbIndex, BIGSdbMLSTProfiler
def gene_scrambler(gene: str, mutation_site_count: Union[int, float], alphabet: Sequence[str] = ["A", "T", "C", "G"]):
rand = random.Random(gene)