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Fixed match metric difference between remote and local

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This commit is contained in:
Harrison Deng
2025-02-06 17:12:31 +00:00
parent a27e09da31
commit 85946eb110
4 changed files with 10 additions and 10 deletions
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6
tests/autobigs/engine/analysis/test_aligners.py
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@@ -2,7 +2,7 @@ from Bio import SeqIO
from Bio.Align import PairwiseAligner
from pytest import mark
from pytest import fixture
from autobigs.engine.analysis.aligners import AsyncPairwiseAlignmentEngine
from autobigs.engine.analysis.aligners import AsyncBiopythonPairwiseAlignmentEngine
from autobigs.engine.structures.alignment import PairwiseAlignment
@fixture
@@ -17,11 +17,11 @@ def tohamaI_bpertussis_genome():
def dummy_engine(request):
aligner = PairwiseAligner("blastn")
aligner.mode = "local"
with AsyncPairwiseAlignmentEngine(aligner, request.param) as engine:
with AsyncBiopythonPairwiseAlignmentEngine(aligner, request.param) as engine:
yield engine
class TestAsyncPairwiseAlignmentEngine:
async def test_single_alignment_no_errors(self, tohamaI_bpertussis_genome, tohamaI_bpertussis_adk: str, dummy_engine: AsyncPairwiseAlignmentEngine):
async def test_single_alignment_no_errors(self, tohamaI_bpertussis_genome, tohamaI_bpertussis_adk: str, dummy_engine: AsyncBiopythonPairwiseAlignmentEngine):
dummy_engine.align(tohamaI_bpertussis_genome, tohamaI_bpertussis_adk)
async for alignment, additional_information in dummy_engine:
assert isinstance(alignment, PairwiseAlignment)