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Removed corresponding test

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Harrison Deng 2025-01-08 15:15:32 +00:00
parent e9ffab5526
commit e93296705d
1 changed files with 0 additions and 12 deletions
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tests/nsbdiagnosistoolkit/engine/test_annotate.py
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from automlst.engine.annotate import annotate_from_genbank, fetch_ncbi_genbank
from Bio import SeqIO
from automlst.engine.data.genomics import AnnotatedString
async def test_annotate_from_genbank_for_adk_annotation():
sequence = str(SeqIO.read("tests/resources/tohama_I_bpertussis.fasta", "fasta").seq)
annotated_sequence = await annotate_from_genbank("CP011448.1", "bpertussis_tohamaI", sequence, max_annotation_length=750, gene_targets=set(["adk"]))
assert isinstance(annotated_sequence, AnnotatedString)
assert len(annotated_sequence.annotations) >= 1
assert annotated_sequence.annotations[0].type == "gene"
assert "adk" in annotated_sequence.annotations[0].feature_properties["gene"]