32 Commits

Author SHA1 Message Date
e942b65ebd Added '--force' to 'sphinx-apidoc' step 2023-04-28 13:42:38 -05:00
61149b88b7 Added sphinx to build environment 2023-04-28 13:32:50 -05:00
47cdd8bc28 Added basic automatic documentation generation 2023-04-28 13:28:12 -05:00
7e3f43434e Added documentation 2023-04-28 12:44:59 -05:00
587c2e753a '.gitignore' now ignores 'output' directory 2023-04-28 11:33:22 -05:00
00cedbb181 Created convenience VSCode 'launch.json' 2023-04-28 11:32:35 -05:00
11d5590355 Added another post-installation test step 2023-04-28 11:32:17 -05:00
c34b219306 CLI will now recursively make output directory if needed 2023-04-28 11:31:41 -05:00
6017eadb2c Clean sequences of line breaks and carriage return 2023-04-28 11:30:23 -05:00
3c5e934c7c Updated 'Jenkinsfile' to fingerprint generated artifacts 2023-04-28 11:14:42 -05:00
9eebaa2f91 Added check to 'cli.py' to verify '--behave-as' parameter 2023-04-28 11:13:37 -05:00
78b4a74bc8 Removed erroneous line from 'cli.py' 2023-04-28 11:08:51 -05:00
beef3ee6a5 Fixed bug in 'cli.py' regarding argument type 2023-04-28 11:04:12 -05:00
2f86ec050f Pipeline now updates environment if possible, otherwise, re-creates it 2023-04-28 11:02:15 -05:00
51c2bd1f7b Conda environment creation now has '--force' for pipeline 2023-04-28 10:58:31 -05:00
515c130146 Replaced 'build' with 'python-build' in 'environment.yml' 2023-04-28 10:53:14 -05:00
927a8a170a Removed unused dictionary declaration 2023-04-28 10:50:55 -05:00
ae3732eba2 Many changes, see details:
Now allow for changing whether alignment is local or global and various scoring parameters

Refactored directory structure

Removed redundant aligned dict pattern for simple iterable

Added unit tests
2023-04-28 10:49:07 -05:00
d42ed83b22 Added 'features' section to README.md 2023-04-28 08:38:55 -05:00
f1fe568818 Added testing of pip installation and archiving 2023-04-24 09:40:29 -05:00
59e2dcaa9d Updated 'README.md' 2023-04-21 14:34:31 -05:00
1d0da9a675 CI no longer fails on unsuccessful package upload 2023-04-21 14:33:26 -05:00
f1ceb1438c Bump version number for pip 2023-04-21 14:27:33 -05:00
b8fa4b5208 Fixed off by one result output 2023-04-21 14:14:22 -05:00
50210a884d Fixed deployed CLI import paths 2023-04-21 13:55:15 -05:00
2a80c2aea2 Added python project description files 2023-04-21 11:47:28 -05:00
6b3c9c312e Added 'Jenkinsfile' and 'environment.yml' 2023-04-21 11:44:01 -05:00
7f9f9405c3 Removed bad parameter 2023-04-20 15:16:34 -05:00
04f730cacb Changed alignment library 2023-04-20 12:24:26 -05:00
f22070e8c3 Renamed project 2023-04-20 10:07:39 -05:00
ecd488b851 Added "README.md" 2023-04-20 09:48:36 -05:00
fed4709d79 Initial commit 2023-04-20 09:48:19 -05:00