e942b65ebd
Added '--force' to 'sphinx-apidoc' step
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2023-04-28 13:42:38 -05:00
61149b88b7
Added sphinx to build environment
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2023-04-28 13:32:50 -05:00
47cdd8bc28
Added basic automatic documentation generation
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2023-04-28 13:28:12 -05:00
7e3f43434e
Added documentation
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2023-04-28 12:44:59 -05:00
587c2e753a
'.gitignore' now ignores 'output' directory
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2023-04-28 11:33:22 -05:00
00cedbb181
Created convenience VSCode 'launch.json'
2023-04-28 11:32:35 -05:00
11d5590355
Added another post-installation test step
2023-04-28 11:32:17 -05:00
c34b219306
CLI will now recursively make output directory if needed
2023-04-28 11:31:41 -05:00
6017eadb2c
Clean sequences of line breaks and carriage return
2023-04-28 11:30:23 -05:00
3c5e934c7c
Updated 'Jenkinsfile' to fingerprint generated artifacts
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2023-04-28 11:14:42 -05:00
9eebaa2f91
Added check to 'cli.py' to verify '--behave-as' parameter
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2023-04-28 11:13:37 -05:00
78b4a74bc8
Removed erroneous line from 'cli.py'
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2023-04-28 11:08:51 -05:00
beef3ee6a5
Fixed bug in 'cli.py' regarding argument type
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2023-04-28 11:04:12 -05:00
2f86ec050f
Pipeline now updates environment if possible, otherwise, re-creates it
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2023-04-28 11:02:15 -05:00
51c2bd1f7b
Conda environment creation now has '--force' for pipeline
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2023-04-28 10:58:31 -05:00
515c130146
Replaced 'build' with 'python-build' in 'environment.yml'
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2023-04-28 10:53:14 -05:00
927a8a170a
Removed unused dictionary declaration
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2023-04-28 10:50:55 -05:00
ae3732eba2
Many changes, see details:
...
ydeng/bmlsa/pipeline/head There was a failure building this commit
Now allow for changing whether alignment is local or global and various scoring parameters
Refactored directory structure
Removed redundant aligned dict pattern for simple iterable
Added unit tests
2023-04-28 10:49:07 -05:00
d42ed83b22
Added 'features' section to README.md
2023-04-28 08:38:55 -05:00
f1fe568818
Added testing of pip installation and archiving
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2023-04-24 09:40:29 -05:00
59e2dcaa9d
Updated 'README.md'
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2023-04-21 14:34:31 -05:00
1d0da9a675
CI no longer fails on unsuccessful package upload
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2023-04-21 14:33:26 -05:00
f1ceb1438c
Bump version number for pip
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2023-04-21 14:27:33 -05:00
b8fa4b5208
Fixed off by one result output
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2023-04-21 14:14:22 -05:00
50210a884d
Fixed deployed CLI import paths
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2023-04-21 13:55:15 -05:00
2a80c2aea2
Added python project description files
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2023-04-21 11:47:28 -05:00
6b3c9c312e
Added 'Jenkinsfile' and 'environment.yml'
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2023-04-21 11:44:01 -05:00
7f9f9405c3
Removed bad parameter
2023-04-20 15:16:34 -05:00
04f730cacb
Changed alignment library
2023-04-20 12:24:26 -05:00
f22070e8c3
Renamed project
2023-04-20 10:07:39 -05:00
ecd488b851
Added "README.md"
2023-04-20 09:48:36 -05:00
fed4709d79
Initial commit
2023-04-20 09:48:19 -05:00
