Basic multi local sequence alignment tool
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.vscode | ||
src/bmlsa | ||
tests | ||
.gitignore | ||
environment.yml | ||
Jenkinsfile | ||
pyproject.toml | ||
README.md | ||
setup.cfg | ||
setup.py | ||
tox.ini |
BMLSA
A Basic multi local sequence alignment tool using the Biopython implementation of the Smith-Waterman alignment algorithm.
Features
- Aligns a CSV of short sequences locally to a given reference sequence
- Outputs in a CSV with old and new positions
- Selectable parameters for alignment
- Compatible with broad-range of input CSV formats
- Automatically align with all sequences in reference FASTA
- All produced output is human readable!