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Basic multi local sequence alignment tool
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README.md

BMLSA

A Basic multi local sequence alignment tool using the Biopython implementation of the Smith-Waterman alignment algorithm.

Features

  • Aligns a CSV of short sequences locally to a given reference sequence
  • Outputs in a CSV with old and new positions
  • Selectable parameters for alignment
  • Compatible with broad-range of input CSV formats
  • Automatically align with all sequences in reference FASTA
  • All produced output is human readable!