Harrison
ae3732eba2
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Now allow for changing whether alignment is local or global and various scoring parameters Refactored directory structure Removed redundant aligned dict pattern for simple iterable Added unit tests
BMLSA
A Basic multi local sequence alignment tool using the Biopython implementation of the Smith-Waterman alignment algorithm.
Features
- Aligns a CSV of short sequences locally to a given reference sequence
- Outputs in a CSV with old and new positions
- Selectable parameters for alignment
- Compatible with broad-range of input CSV formats
- Automatically align with all sequences in reference FASTA
- All produced output is human readable!