hyginn
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62cb8e42c1
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put data in ./myScripts/
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2020-10-02 18:32:29 +10:00 |
|
hyginn
|
5ff4b3f7cb
|
File should be in ./myScripts/...
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2020-10-02 18:31:06 +10:00 |
|
hyginn
|
e974fbdb10
|
add jsonlite:: to fromjJSON() in code sample
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2020-10-02 18:27:59 +10:00 |
|
hyginn
|
d38092f08a
|
mRNA for Mutation-effect IA: controls
|
2020-10-01 18:19:59 +10:00 |
|
hyginn
|
8839248362
|
Reorganized proportional plots into a "further reading" section; added nested-box, and sankey plot visualization of proportions. Introduced plotly.
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2020-10-01 18:18:51 +10:00 |
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hyginn
|
8a5c5b3961
|
return taxID as name of return value
|
2020-10-01 11:18:08 +10:00 |
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hyginn
|
39417c8e60
|
./myScripts/.myProfile.R needs to be sourced after!
.utilities.R to ensure utility functions are available.
|
2020-10-01 03:04:35 +10:00 |
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hyginn
|
9e77d948e9
|
return ChimeraX response invisibly and provide example of using the data for a plot
|
2020-09-29 14:12:11 +10:00 |
|
hyginn
|
12e3de439f
|
add overlooked jsonlite:: prefix to fromJson()
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2020-09-28 18:00:45 +10:00 |
|
hyginn
|
12213b73a4
|
Update to student-edited file locations
|
2020-09-28 17:49:45 +10:00 |
|
hyginn
|
744e762dc2
|
New script to demonstarte remote scripting of ChimeraX
|
2020-09-27 23:40:27 +10:00 |
|
hyginn
|
df3dbb0fb6
|
add CX() command for ChimeraX rempote control from R-scripts.
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2020-09-27 23:40:01 +10:00 |
|
hyginn
|
0fb02b1f2f
|
ignore the myScripts folder from now on
|
2020-09-27 00:08:31 +10:00 |
|
hyginn
|
389efcdfab
|
Contents for a sample .Rmd page
|
2020-09-27 00:07:14 +10:00 |
|
hyginn
|
777cabcb20
|
Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
|
2020-09-26 21:39:18 +10:00 |
|
hyginn
|
68b00c83e8
|
add TOC
|
2020-09-26 18:22:32 +10:00 |
|
hyginn
|
b9ac373fce
|
Update - file locations and authorization of phylip apps on Mac.
|
2020-09-26 18:21:17 +10:00 |
|
hyginn
|
85b7353646
|
ignore assignment produced data/APSEStreeRproml.rds
|
2020-09-26 18:20:33 +10:00 |
|
hyginn
|
12725799e1
|
Maintenance
|
2020-09-26 16:45:29 +10:00 |
|
hyginn
|
16513dc488
|
ignore assignment file data/APSESphyloSet.mfa
|
2020-09-26 16:45:10 +10:00 |
|
hyginn
|
866a1c0e8f
|
maintenance, update file locations, minor bugs
|
2020-09-26 01:07:49 +10:00 |
|
hyginn
|
092494d9de
|
update validateFASTA() logic to accommodate blanks in spacers
|
2020-09-26 00:43:10 +10:00 |
|
hyginn
|
169ca58b92
|
Bugfix: q -> Q
|
2020-09-25 21:51:04 +10:00 |
|
hyginn
|
091880d205
|
Update script location
|
2020-09-25 21:50:42 +10:00 |
|
hyginn
|
092daaef97
|
Fix makeProteinDB.R location
|
2020-09-25 21:28:17 +10:00 |
|
hyginn
|
126f956ea7
|
update TOC
|
2020-09-25 21:07:25 +10:00 |
|
hyginn
|
85d53ae2ee
|
New AA colouring scheme - with better separation and transparent colours for overlapping plots. prcomp() analysis of amino acid similarity.
|
2020-09-25 21:06:24 +10:00 |
|
hyginn
|
069d8136e3
|
Clarifications, and better color palettes for correlations
|
2020-09-25 18:51:38 +10:00 |
|
hyginn
|
b42adac3f3
|
minor updates
|
2020-09-25 15:24:51 +10:00 |
|
hyginn
|
abe30a5fb6
|
Maintenance
|
2020-09-25 13:20:10 +10:00 |
|
hyginn
|
5a3bbc31c6
|
TOC, and filename typo
|
2020-09-25 12:03:56 +10:00 |
|
hyginn
|
404fb05c79
|
minor maintenance
|
2020-09-25 12:01:08 +10:00 |
|
hyginn
|
abb146f828
|
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
|
2020-09-25 11:29:28 +10:00 |
|
hyginn
|
36140bc984
|
updates; vectorized dbFetchUniProtSeq()
|
2020-09-25 10:47:41 +10:00 |
|
hyginn
|
2775c7c9a8
|
Updates to UniProtIDmap, and address httr/curl initialization bug
|
2020-09-25 02:27:42 +10:00 |
|
hyginn
|
f3a436cb6e
|
Maintenance. Use AACOLS.
|
2020-09-25 01:50:07 +10:00 |
|
hyginn
|
80079f9c5d
|
Discuss code-local testing
|
2020-09-25 00:25:15 +10:00 |
|
hyginn
|
1002703a80
|
Maintenance
|
2020-09-24 22:15:28 +10:00 |
|
hyginn
|
60cf30dc5a
|
Maintenance
|
2020-09-24 20:41:10 +10:00 |
|
hyginn
|
861db60879
|
cleanup after adding MYSPE to .myProfile.R
|
2020-09-24 20:16:41 +10:00 |
|
hyginn
|
9323c57549
|
bugfix
|
2020-09-24 19:50:39 +10:00 |
|
hyginn
|
e55cb81f8d
|
validate ./scripts/myProfile, and automatically set MYSPE
|
2020-09-24 19:47:32 +10:00 |
|
hyginn
|
68c5828e44
|
Removed vacous blanks from spacing lines
|
2020-09-24 18:45:47 +10:00 |
|
hyginn
|
528dc91407
|
Major refactoring to simplify logic and clean code
|
2020-09-24 18:45:22 +10:00 |
|
hyginn
|
f48b6bf3b7
|
add constants AAVALID; NUCVALID, NUCAMBIG. add AACOLS; add validateFA(); readFASTA; writeFASTA.
|
2020-09-24 18:43:44 +10:00 |
|
hyginn
|
f8adefc6f9
|
Maintenance
|
2020-09-24 08:55:14 +10:00 |
|
hyginn
|
4c793a6074
|
Maintenace, and add a Fibonacci-sequence example
|
2020-09-23 23:21:46 +10:00 |
|
hyginn
|
76b18a8a35
|
Update PPI-Analysis assets and code
|
2020-09-23 20:47:26 +10:00 |
|
hyginn
|
42ad74b2f2
|
Changed 1 to 3
|
2020-09-23 14:13:52 +10:00 |
|
hyginn
|
cf90c52a61
|
Update the ScCC network data
|
2020-09-23 14:06:58 +10:00 |
|