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hyginn f48b6bf3b7 add constants AAVALID; NUCVALID, NUCAMBIG. add AACOLS; add validateFA(); readFASTA; writeFASTA.
2020-09-24 18:43:44 +10:00
data
Update PPI-Analysis assets and code
2020-09-23 20:47:26 +10:00
myScripts
2020 updates and maintenance
2020-09-16 16:32:51 +10:00
scripts
Update PPI-Analysis assets and code
2020-09-23 20:47:26 +10:00
tests
New unit: RPR-Unit_tests, with sample test file and tests directory
2017-10-15 18:46:42 -04:00
.gitignore
cleanup
2019-01-07 17:51:50 +10:00
.myProfile.R
update process for moving .myProfile.R
2020-09-21 14:54:30 +10:00
.notes
cleanup
2019-01-07 17:51:50 +10:00
.Rprofile
update process for moving .myProfile.R
2020-09-21 14:54:30 +10:00
.tmp.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
.utilities.R
add constants AAVALID; NUCVALID, NUCAMBIG. add AACOLS; add validateFA(); readFASTA; writeFASTA.
2020-09-24 18:43:44 +10:00
ABC-addSACCE_APSESproteins.R
Added and updated learning units
2017-09-12 16:09:20 -04:00
ABC-units.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
ABC-units.Rproj
Install files and folders
2017-08-18 22:04:01 +02:00
BIN-ALI-BLAST.R
2020 updates - deactivate for maintenance
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BIN-ALI-Dotplot.R
2020 updates - deactivate for maintenance
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BIN-ALI-MSA.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-Optimal_sequence_alignment.R
2020 updates - deactivate for maintenance
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BIN-ALI-Similarity.R
2020 updates - deactivate for maintenance
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BIN-Data_integration.R
2020 updates - deactivate for maintenance
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BIN-FUNC-Domain_annotation.R
2020 updates - deactivate for maintenance
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BIN-FUNC-Semantic_similarity.R
2020 updates - deactivate for maintenance
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BIN-MYSPE.R
Set to active, and tweak subtitle
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BIN-PHYLO-Data_preparation.R
2020 updates - deactivate for maintenance
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BIN-PHYLO-Tree_analysis.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
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BIN-PHYLO-Tree_building.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
2020-09-21 14:28:24 +10:00
BIN-PPI-Analysis.R
Update PPI-Analysis assets and code
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BIN-SEQA-Composition.R
2020 updates - deactivate for maintenance
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BIN-Sequence.R
Maintenace, and add a Fibonacci-sequence example
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BIN-Storing_data.R
set to active and update submission tasks
2020-09-21 21:35:16 +10:00
FND-Genetic_code.R
Maintenance
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FND-MAT-Graphs_and_networks.R
Maintenance
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FND-STA-Information_theory.R
2020 updates - deactivate for maintenance
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FND-STA-Probability_distribution.R
Update PPI-Analysis assets and code
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FND-STA-Significance.R
Maintenance and sample solutions
2020-09-23 06:07:40 +10:00
functionTemplate.R
added a non-executing block for test code
2017-10-28 23:07:52 -04:00
README.md
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Biostrings.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
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RPR-eUtils_XML.R
2020 updates - deactivate for maintenance
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RPR-FASTA.R
2020 updates - deactivate for maintenance
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RPR-Genetic_code_optimality.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-GEO2R.R
Updated MYSPE data and entire workflow. Changed all .RData to .rds
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RPR-Introduction.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
RPR-PROSITE_POST.R
2020 updates - deactivate for maintenance
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RPR-RegEx.R
2020 Maintenance
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RPR-SX-PDB.R
stylisitc updates
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RPR-UniProt_GET.R
2020 updates - deactivate for maintenance
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RPR-Unit_testing.R
2020 updates - deactivate for maintenance
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scriptTemplate.R
Use requireNamespace(), <package>::<function>() idiom,
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README.md

ABC-units

A Bioinformatics Course: R modules for learning units

Follow the instructions in the learning unit to install your local copy of this R-project.

Description
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Readme 7.6 MiB
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R 100%