ydeng/bch441-work-abc-units
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
157 Commits 1 Branch 0 Tags
0fb02b1f2fcefcf84ac1628492599d477070ccef
Go to file
Clone
Open with VS Code Open with VSCodium Open with Intellij IDEA
Download ZIP Download TAR.GZ Download BUNDLE
hyginn 0fb02b1f2f ignore the myScripts folder from now on
2020-09-27 00:08:31 +10:00
data
Contents for a sample .Rmd page
2020-09-27 00:07:14 +10:00
myScripts
2020 updates and maintenance
2020-09-16 16:32:51 +10:00
scripts
Bugfix: q -> Q
2020-09-25 21:51:04 +10:00
tests
New unit: RPR-Unit_tests, with sample test file and tests directory
2017-10-15 18:46:42 -04:00
.gitignore
ignore the myScripts folder from now on
2020-09-27 00:08:31 +10:00
.myProfile.R
update process for moving .myProfile.R
2020-09-21 14:54:30 +10:00
.notes
cleanup
2019-01-07 17:51:50 +10:00
.Rprofile
cleanup after adding MYSPE to .myProfile.R
2020-09-24 20:16:41 +10:00
.tmp.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
.utilities.R
update validateFASTA() logic to accommodate blanks in spacers
2020-09-26 00:43:10 +10:00
ABC-addSACCE_APSESproteins.R
Added and updated learning units
2017-09-12 16:09:20 -04:00
ABC-units.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
ABC-units.Rproj
Install files and folders
2017-08-18 22:04:01 +02:00
BIN-ALI-BLAST.R
Update script location
2020-09-25 21:50:42 +10:00
BIN-ALI-Dotplot.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
BIN-ALI-MSA.R
maintenance, update file locations, minor bugs
2020-09-26 01:07:49 +10:00
BIN-ALI-Optimal_sequence_alignment.R
Fix makeProteinDB.R location
2020-09-25 21:28:17 +10:00
BIN-ALI-Similarity.R
update TOC
2020-09-25 21:07:25 +10:00
BIN-Data_integration.R
Updates to UniProtIDmap, and address httr/curl initialization bug
2020-09-25 02:27:42 +10:00
BIN-FUNC-Domain_annotation.R
minor updates
2020-09-25 15:24:51 +10:00
BIN-FUNC-Semantic_similarity.R
Maintenance
2020-09-25 13:20:10 +10:00
BIN-MYSPE.R
Set to active, and tweak subtitle
2020-09-21 15:23:27 +10:00
BIN-PHYLO-Data_preparation.R
Maintenance
2020-09-26 16:45:29 +10:00
BIN-PHYLO-Tree_analysis.R
Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
2020-09-26 21:39:18 +10:00
BIN-PHYLO-Tree_building.R
add TOC
2020-09-26 18:22:32 +10:00
BIN-PPI-Analysis.R
Update PPI-Analysis assets and code
2020-09-23 20:47:26 +10:00
BIN-SEQA-Composition.R
Maintenance. Use AACOLS.
2020-09-25 01:50:07 +10:00
BIN-Sequence.R
Maintenace, and add a Fibonacci-sequence example
2020-09-23 23:21:46 +10:00
BIN-Storing_data.R
set to active and update submission tasks
2020-09-21 21:35:16 +10:00
FND-Genetic_code.R
Maintenance
2020-09-24 08:55:14 +10:00
FND-MAT-Graphs_and_networks.R
Maintenance
2020-09-23 13:00:38 +10:00
FND-STA-Information_theory.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
FND-STA-Probability_distribution.R
Update PPI-Analysis assets and code
2020-09-23 20:47:26 +10:00
FND-STA-Significance.R
Maintenance and sample solutions
2020-09-23 06:07:40 +10:00
functionTemplate.R
added a non-executing block for test code
2017-10-28 23:07:52 -04:00
README.md
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Biostrings.R
Maintenance
2020-09-24 20:41:10 +10:00
RPR-eUtils_XML.R
TOC, and filename typo
2020-09-25 12:03:56 +10:00
RPR-FASTA.R
update validateFASTA() logic to accommodate blanks in spacers
2020-09-26 00:43:10 +10:00
RPR-Genetic_code_optimality.R
Maintenance
2020-09-24 22:15:28 +10:00
RPR-GEO2R.R
Clarifications, and better color palettes for correlations
2020-09-25 18:51:38 +10:00
RPR-Introduction.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
RPR-PROSITE_POST.R
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
2020-09-25 11:29:28 +10:00
RPR-RegEx.R
2020 Maintenance
2020-09-22 21:02:13 +10:00
RPR-SX-PDB.R
stylisitc updates
2020-09-22 13:02:29 +10:00
RPR-UniProt_GET.R
updates; vectorized dbFetchUniProtSeq()
2020-09-25 10:47:41 +10:00
RPR-Unit_testing.R
Discuss code-local testing
2020-09-25 00:25:15 +10:00
scriptTemplate.R
Use requireNamespace(), <package>::<function>() idiom,
2019-01-08 17:11:25 +10:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units

Follow the instructions in the learning unit to install your local copy of this R-project.

Description
No description provided
Readme 7.6 MiB
Languages
R 100%