Commit Graph

104 Commits

Author SHA1 Message Date
hyginn
3d91337e70 New workflow for Introduction 2020-09-19 22:31:06 +10:00
hyginn
37ef655d47 2020 updates - deactivate for maintenance 2020-09-18 21:56:30 +10:00
hyginn
89bdd14d1c Test for default stringsAsFactors and complain if TRUE 2020-09-18 08:48:19 +10:00
hyginn
599f8a3f98 2020 updates and maintenance 2020-09-16 16:32:51 +10:00
hyginn
46a157bb17 Maintenance 2019-11-14 22:44:07 -05:00
hyginn
5b197b8829 Maintenance 2019-11-14 22:40:45 -05:00
hyginn
bae2d33f14 Prefix Biostrings:: to subseq() 2019-11-14 22:38:53 -05:00
hyginn
84aa2dca0b prefix function with package name 2019-11-14 22:12:33 -05:00
hyginn
cffd803c23 Use requireNamespace(), <package>::<function>() idiom,
Biocmanager:: - not biocLite()
2019-01-08 17:11:25 +10:00
hyginn
8cdbb9f4cc myScript.R should not exist in master 2019-01-08 11:32:39 +10:00
hyginn
c7393ca287 cleanup 2019-01-07 17:51:50 +10:00
hyginn
64772c5702 sample data 2019-01-07 17:51:11 +10:00
hyginn
6f54293592 Maintenance updates, and revised set.seed() usage 2019-01-07 16:17:23 +10:00
hyginn
2ab162e375 Maintance: typos, update of prosite URL 2018-12-02 18:52:36 +10:00
hyginn
1dd87e7473 Maintainance fixes and UniProt API change bugfix 2018-10-30 21:27:42 -04:00
hyginn
ead20d5f18 Fixed merge conflict noise 2018-01-28 18:53:10 -05:00
hyginn
c17b340b38 Add material
Merge branch 'master' of https://github.com/hyginn/ABC-units

# Conflicts:
#	RPR-GEO2R.R
2018-01-28 18:49:24 -05:00
hyginn
c4fed71a7f Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:47:15 -05:00
hyginn
b17a9e202a Add section on GPL annotations to RPR-GEO2R 2018-01-28 18:23:21 -05:00
hyginn
359434d863 Typo 2017-11-23 07:19:31 -05:00
hyginn
75c6efe4a6 variable name typo 2017-11-23 00:32:13 -05:00
hyginn
8ac1582514 TRUE and FALSE were inverted in explanation of masking 2017-11-22 12:05:02 -05:00
hyginn
5e4ecbaf6f New code - under development 2017-11-20 19:01:20 -05:00
hyginn
82841de74a Change blockWidth > 60 from error to warning 2017-11-20 19:00:55 -05:00
hyginn
a1b5eb7b90 Correction re. Jeffreys' pseudocounts 2017-11-20 19:00:23 -05:00
hyginn
9a987c22be Add comment re. failing msaMuscle() 2017-11-20 18:59:54 -05:00
hyginn
f747f7896e typo 2017-11-17 23:44:05 -05:00
hyginn
450aefa119 New unit 2017-11-17 23:43:50 -05:00
hyginn
40b9e6fc04 update to function <- package::function idiom 2017-11-16 16:37:53 -05:00
hyginn
62a1a76558 Updated logic 2017-11-16 16:01:56 -05:00
hyginn
4bbf663eca load seqinr 2017-11-16 14:46:15 -05:00
hyginn
a58e35f060 Fixed parsing and added missing logic 2017-11-16 11:47:53 -05:00
hyginn
206e2e14bb New unit, and update to annotation file logic 2017-11-14 02:57:13 -05:00
hyginn
2433bc8652 fixed annotation errors 2017-11-14 02:56:39 -05:00
hyginn
8cb69f2986 New unit 2017-11-13 00:51:04 -05:00
hyginn
93523c6533 New unit and associated data 2017-11-12 04:39:00 -05:00
hyginn
28be433b83 Added ToDo 2017-11-12 04:38:15 -05:00
hyginn
c93b6df235 Style 2017-11-12 04:37:53 -05:00
hyginn
16d96d79f4 New unit and data 2017-11-09 23:44:25 -05:00
hyginn
943dbeba8f style fix 2017-11-09 23:43:48 -05:00
hyginn
f1e222f4e0 Bugfixes 2017-11-03 15:20:16 -04:00
hyginn
2b6ca615b9 Merge branch 'master' of https://github.com/hyginn/ABC-units 2017-11-03 15:19:14 -04:00
hyginn
67abde8920 bugfix 2017-11-03 15:15:46 -04:00
hyginn
563ae186d0 bugfix 2017-11-03 15:08:17 -04:00
hyginn
1d6170f417 Updates, and add treedist() 2017-11-01 23:30:01 -04:00
hyginn
0da30ec109 bugfix 2017-11-01 23:29:30 -04:00
hyginn
6121323df3 Correct calculation of empirical p-vale 2017-11-01 23:29:18 -04:00
hyginn
f6983b142a Update 2017-11-01 23:28:12 -04:00
hyginn
8fe794cf33 add PHYLO units 2017-11-01 09:44:24 -04:00
hyginn
7cc2853d00 add fetchMSAmotif() function 2017-11-01 09:43:48 -04:00