hyginn
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389efcdfab
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Contents for a sample .Rmd page
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2020-09-27 00:07:14 +10:00 |
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hyginn
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777cabcb20
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Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
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2020-09-26 21:39:18 +10:00 |
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hyginn
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68b00c83e8
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add TOC
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2020-09-26 18:22:32 +10:00 |
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hyginn
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b9ac373fce
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Update - file locations and authorization of phylip apps on Mac.
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2020-09-26 18:21:17 +10:00 |
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hyginn
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85b7353646
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ignore assignment produced data/APSEStreeRproml.rds
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2020-09-26 18:20:33 +10:00 |
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hyginn
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12725799e1
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Maintenance
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2020-09-26 16:45:29 +10:00 |
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hyginn
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16513dc488
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ignore assignment file data/APSESphyloSet.mfa
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2020-09-26 16:45:10 +10:00 |
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hyginn
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866a1c0e8f
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maintenance, update file locations, minor bugs
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2020-09-26 01:07:49 +10:00 |
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hyginn
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092494d9de
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update validateFASTA() logic to accommodate blanks in spacers
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2020-09-26 00:43:10 +10:00 |
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hyginn
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169ca58b92
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Bugfix: q -> Q
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2020-09-25 21:51:04 +10:00 |
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hyginn
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091880d205
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Update script location
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2020-09-25 21:50:42 +10:00 |
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hyginn
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092daaef97
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Fix makeProteinDB.R location
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2020-09-25 21:28:17 +10:00 |
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hyginn
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126f956ea7
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update TOC
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2020-09-25 21:07:25 +10:00 |
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hyginn
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85d53ae2ee
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New AA colouring scheme - with better separation and transparent colours for overlapping plots. prcomp() analysis of amino acid similarity.
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2020-09-25 21:06:24 +10:00 |
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hyginn
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069d8136e3
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Clarifications, and better color palettes for correlations
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2020-09-25 18:51:38 +10:00 |
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hyginn
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b42adac3f3
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minor updates
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2020-09-25 15:24:51 +10:00 |
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hyginn
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abe30a5fb6
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Maintenance
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2020-09-25 13:20:10 +10:00 |
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hyginn
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5a3bbc31c6
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TOC, and filename typo
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2020-09-25 12:03:56 +10:00 |
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hyginn
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404fb05c79
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minor maintenance
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2020-09-25 12:01:08 +10:00 |
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hyginn
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abb146f828
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bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
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2020-09-25 11:29:28 +10:00 |
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hyginn
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36140bc984
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updates; vectorized dbFetchUniProtSeq()
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2020-09-25 10:47:41 +10:00 |
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hyginn
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2775c7c9a8
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Updates to UniProtIDmap, and address httr/curl initialization bug
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2020-09-25 02:27:42 +10:00 |
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hyginn
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f3a436cb6e
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Maintenance. Use AACOLS.
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2020-09-25 01:50:07 +10:00 |
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hyginn
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80079f9c5d
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Discuss code-local testing
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2020-09-25 00:25:15 +10:00 |
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hyginn
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1002703a80
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Maintenance
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2020-09-24 22:15:28 +10:00 |
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hyginn
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60cf30dc5a
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Maintenance
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2020-09-24 20:41:10 +10:00 |
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hyginn
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861db60879
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cleanup after adding MYSPE to .myProfile.R
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2020-09-24 20:16:41 +10:00 |
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hyginn
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9323c57549
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bugfix
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2020-09-24 19:50:39 +10:00 |
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hyginn
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e55cb81f8d
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validate ./scripts/myProfile, and automatically set MYSPE
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2020-09-24 19:47:32 +10:00 |
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hyginn
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68c5828e44
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Removed vacous blanks from spacing lines
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2020-09-24 18:45:47 +10:00 |
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hyginn
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528dc91407
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Major refactoring to simplify logic and clean code
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2020-09-24 18:45:22 +10:00 |
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hyginn
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f48b6bf3b7
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add constants AAVALID; NUCVALID, NUCAMBIG. add AACOLS; add validateFA(); readFASTA; writeFASTA.
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2020-09-24 18:43:44 +10:00 |
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hyginn
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f8adefc6f9
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Maintenance
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2020-09-24 08:55:14 +10:00 |
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hyginn
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4c793a6074
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Maintenace, and add a Fibonacci-sequence example
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2020-09-23 23:21:46 +10:00 |
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hyginn
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76b18a8a35
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Update PPI-Analysis assets and code
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2020-09-23 20:47:26 +10:00 |
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hyginn
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42ad74b2f2
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Changed 1 to 3
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2020-09-23 14:13:52 +10:00 |
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hyginn
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cf90c52a61
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Update the ScCC network data
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2020-09-23 14:06:58 +10:00 |
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hyginn
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02e20ba812
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Maintenance
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2020-09-23 13:00:38 +10:00 |
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hyginn
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0e71fc337e
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Maintenance and sample solutions
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2020-09-23 06:07:40 +10:00 |
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hyginn
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4c0e75d792
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Maintenance
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2020-09-23 00:32:36 +10:00 |
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hyginn
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f90f581963
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ToDo ...
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2020-09-22 21:02:27 +10:00 |
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hyginn
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4c2e911a5a
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2020 Maintenance
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2020-09-22 21:02:13 +10:00 |
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hyginn
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ca0d78c4b9
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stylisitc updates
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2020-09-22 13:02:29 +10:00 |
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hyginn
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67c92a49d9
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change validation logic in selectPDBrep() and add seal()
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2020-09-22 13:02:10 +10:00 |
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hyginn
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03674b57dc
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set to active and update submission tasks
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2020-09-21 21:35:16 +10:00 |
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hyginn
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cfbfee9dba
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add digest:: and jsonlite::, and sameSpecies(),
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2020-09-21 21:34:45 +10:00 |
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hyginn
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b1d712891f
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Set to active, and tweak subtitle
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2020-09-21 15:23:27 +10:00 |
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hyginn
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12c11a6351
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Update plot and legend layout
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2020-09-21 15:06:27 +10:00 |
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hyginn
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2432d64f18
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update process for moving .myProfile.R
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2020-09-21 14:54:30 +10:00 |
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hyginn
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3082b05a0b
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Moved setting default stringsAsFactors to .myProfile.R since it needs to persist
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2020-09-21 14:44:08 +10:00 |
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