hyginn
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c064b34000
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add sealKey()
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2020-10-12 09:16:52 +10:00 |
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hyginn
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a590e6d9c7
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New plotting reference and associated integrated dataset
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2020-10-06 23:37:29 +10:00 |
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hyginn
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31c519be9f
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Bugfix: called the wrong function on ENSPsel in l. 220
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2020-10-04 14:11:13 +10:00 |
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hyginn
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285c0db8a5
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BUGFIX: variable was tested before being loaded
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2020-10-03 08:57:03 +10:00 |
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hyginn
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e0ff45fe94
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TBC
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2020-10-02 21:15:34 +10:00 |
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hyginn
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efb52f636d
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specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded.
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2020-10-02 20:59:29 +10:00 |
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hyginn
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152d01273f
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data in ./myScripts/
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2020-10-02 18:50:36 +10:00 |
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hyginn
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3173aec119
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srsly: ./myScripts/ !
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2020-10-02 18:38:01 +10:00 |
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hyginn
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62cb8e42c1
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put data in ./myScripts/
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2020-10-02 18:32:29 +10:00 |
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hyginn
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5ff4b3f7cb
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File should be in ./myScripts/...
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2020-10-02 18:31:06 +10:00 |
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hyginn
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e974fbdb10
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add jsonlite:: to fromjJSON() in code sample
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2020-10-02 18:27:59 +10:00 |
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hyginn
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d38092f08a
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mRNA for Mutation-effect IA: controls
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2020-10-01 18:19:59 +10:00 |
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hyginn
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8839248362
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Reorganized proportional plots into a "further reading" section; added nested-box, and sankey plot visualization of proportions. Introduced plotly.
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2020-10-01 18:18:51 +10:00 |
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hyginn
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8a5c5b3961
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return taxID as name of return value
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2020-10-01 11:18:08 +10:00 |
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hyginn
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39417c8e60
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./myScripts/.myProfile.R needs to be sourced after!
.utilities.R to ensure utility functions are available.
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2020-10-01 03:04:35 +10:00 |
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hyginn
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9e77d948e9
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return ChimeraX response invisibly and provide example of using the data for a plot
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2020-09-29 14:12:11 +10:00 |
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hyginn
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12e3de439f
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add overlooked jsonlite:: prefix to fromJson()
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2020-09-28 18:00:45 +10:00 |
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hyginn
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12213b73a4
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Update to student-edited file locations
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2020-09-28 17:49:45 +10:00 |
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hyginn
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744e762dc2
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New script to demonstarte remote scripting of ChimeraX
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2020-09-27 23:40:27 +10:00 |
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hyginn
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df3dbb0fb6
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add CX() command for ChimeraX rempote control from R-scripts.
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2020-09-27 23:40:01 +10:00 |
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hyginn
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0fb02b1f2f
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ignore the myScripts folder from now on
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2020-09-27 00:08:31 +10:00 |
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hyginn
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389efcdfab
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Contents for a sample .Rmd page
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2020-09-27 00:07:14 +10:00 |
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hyginn
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777cabcb20
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Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
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2020-09-26 21:39:18 +10:00 |
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hyginn
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68b00c83e8
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add TOC
|
2020-09-26 18:22:32 +10:00 |
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hyginn
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b9ac373fce
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Update - file locations and authorization of phylip apps on Mac.
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2020-09-26 18:21:17 +10:00 |
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hyginn
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85b7353646
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ignore assignment produced data/APSEStreeRproml.rds
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2020-09-26 18:20:33 +10:00 |
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hyginn
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12725799e1
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Maintenance
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2020-09-26 16:45:29 +10:00 |
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hyginn
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16513dc488
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ignore assignment file data/APSESphyloSet.mfa
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2020-09-26 16:45:10 +10:00 |
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hyginn
|
866a1c0e8f
|
maintenance, update file locations, minor bugs
|
2020-09-26 01:07:49 +10:00 |
|
hyginn
|
092494d9de
|
update validateFASTA() logic to accommodate blanks in spacers
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2020-09-26 00:43:10 +10:00 |
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hyginn
|
169ca58b92
|
Bugfix: q -> Q
|
2020-09-25 21:51:04 +10:00 |
|
hyginn
|
091880d205
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Update script location
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2020-09-25 21:50:42 +10:00 |
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hyginn
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092daaef97
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Fix makeProteinDB.R location
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2020-09-25 21:28:17 +10:00 |
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hyginn
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126f956ea7
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update TOC
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2020-09-25 21:07:25 +10:00 |
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hyginn
|
85d53ae2ee
|
New AA colouring scheme - with better separation and transparent colours for overlapping plots. prcomp() analysis of amino acid similarity.
|
2020-09-25 21:06:24 +10:00 |
|
hyginn
|
069d8136e3
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Clarifications, and better color palettes for correlations
|
2020-09-25 18:51:38 +10:00 |
|
hyginn
|
b42adac3f3
|
minor updates
|
2020-09-25 15:24:51 +10:00 |
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hyginn
|
abe30a5fb6
|
Maintenance
|
2020-09-25 13:20:10 +10:00 |
|
hyginn
|
5a3bbc31c6
|
TOC, and filename typo
|
2020-09-25 12:03:56 +10:00 |
|
hyginn
|
404fb05c79
|
minor maintenance
|
2020-09-25 12:01:08 +10:00 |
|
hyginn
|
abb146f828
|
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
|
2020-09-25 11:29:28 +10:00 |
|
hyginn
|
36140bc984
|
updates; vectorized dbFetchUniProtSeq()
|
2020-09-25 10:47:41 +10:00 |
|
hyginn
|
2775c7c9a8
|
Updates to UniProtIDmap, and address httr/curl initialization bug
|
2020-09-25 02:27:42 +10:00 |
|
hyginn
|
f3a436cb6e
|
Maintenance. Use AACOLS.
|
2020-09-25 01:50:07 +10:00 |
|
hyginn
|
80079f9c5d
|
Discuss code-local testing
|
2020-09-25 00:25:15 +10:00 |
|
hyginn
|
1002703a80
|
Maintenance
|
2020-09-24 22:15:28 +10:00 |
|
hyginn
|
60cf30dc5a
|
Maintenance
|
2020-09-24 20:41:10 +10:00 |
|
hyginn
|
861db60879
|
cleanup after adding MYSPE to .myProfile.R
|
2020-09-24 20:16:41 +10:00 |
|
hyginn
|
9323c57549
|
bugfix
|
2020-09-24 19:50:39 +10:00 |
|
hyginn
|
e55cb81f8d
|
validate ./scripts/myProfile, and automatically set MYSPE
|
2020-09-24 19:47:32 +10:00 |
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