Commit Graph

215 Commits

Author SHA1 Message Date
hyginn
5e7b683323 Removed 2021 Update warning 2021-10-26 17:04:31 +02:00
hyginn
4b2bab0f12 Class session notes for 2021-10-12 2021-10-19 22:44:34 +02:00
hyginn
bb2e2a4c85 Revert to canonical install.packages("name") idiom 2021-10-12 12:17:53 +02:00
hyginn
6939bd1e88 New script 2021-10-12 12:17:12 +02:00
hyginn
c9b939b096 Typos 2021-10-05 23:48:34 +02:00
hyginn
ce78612a3b New script - illustrating the pipe 2021-10-05 22:53:41 +02:00
hyginn
9603fbede8 Add troubleshooting hints via errText[[...]] 2021-10-04 22:53:06 +02:00
hyginn
2e65e18f22 Unlocked (and updated) 2021-09-18 12:54:46 -04:00
hyginn
5fa5dd9ff7 New retrieval logic 2021-09-18 12:36:46 -04:00
hyginn
c3ca448997 Update MYSPE datasets 2021-09-18 12:36:26 -04:00
hyginn
86d619ad51 rewrite getMYSPE() 2021-09-18 12:00:51 -04:00
hyginn
9143b784e9 Locked out - Updates needed for 2021 2021-09-16 01:29:19 -04:00
hyginn
2956ba29b5 2021 minimal maintenance 2021-09-16 01:16:22 -04:00
hyginn
dd537460df RNG seems to have changed - update a number 2021-09-16 01:05:34 -04:00
hyginn
678b70ed68 First minor updates 2021 2021-09-16 00:54:29 -04:00
hyginn
44209e6495 Add a line for example usage 2021-09-16 00:53:52 -04:00
hyginn
65193f1e54 Minor 2021 Maintenance 2021-09-16 00:53:23 -04:00
hyginn
5c577eb8d6 Small 2021 Updates 2021-09-16 00:52:14 -04:00
hyginn
648925525f style update 2021-09-15 20:54:29 -04:00
hyginn
6714171102 typo 2021-09-15 20:12:10 -04:00
hyginn
02ea110fe2 bugfix - wrong function name 2020-11-13 15:38:08 +10:00
hyginn
33ba40a252 Bugfix in AddProtein - paste() returns deparsed expression for single-column lists... 2020-11-09 22:02:27 +10:00
hyginn
39b1da5897 updates to use of "data" in nls()/nlrob() 2020-11-05 20:34:21 +10:00
hyginn
1f2ec21546 Extensive additions on Poisson and Binomial distributions and NLS fits 2020-11-03 21:24:56 +10:00
hyginn
7bbd19078f Clarifications 2020-11-03 21:22:08 +10:00
hyginn
7c19559839 one more palette 2020-10-21 06:14:16 +10:00
hyginn
08e1803c44 Update vector ID's for betweenness centrality 2020-10-21 06:13:36 +10:00
hyginn
052e148999 Removed lock-out message 2020-10-14 06:18:07 +10:00
hyginn
55a0d18a66 patch a problem where jsonlite:: oversimplifies from single entries to array, rather than list. 2020-10-13 22:38:47 +10:00
hyginn
d2fffdf0b8 Add code for shared protein data import 2020-10-13 22:37:31 +10:00
hyginn
5524832a75 bugfix: wrong iterator 2020-10-13 21:45:14 +10:00
hyginn
a50688e0d0 bugfix: jsonlite::fromJSON() chokes on a blank 2020-10-13 20:35:45 +10:00
hyginn
804e3a73b7 bugfix: import all taxonomy IDs as integer 2020-10-13 20:33:04 +10:00
hyginn
0541612e0b Bugfixes 2020-10-13 20:27:56 +10:00
hyginn
307aad556e remove duplicate annotation 2020-10-13 20:26:17 +10:00
hyginn
4d071cf8d5 Add code and utility functions for database export of protein annotations to JSON - towards sharing annotations on the Student Wiki Public page 2020-10-13 16:08:35 +10:00
hyginn
3bee83495f add cex examples 2020-10-12 09:18:10 +10:00
hyginn
0c395a1c83 style 2020-10-12 09:17:09 +10:00
hyginn
c064b34000 add sealKey() 2020-10-12 09:16:52 +10:00
hyginn
a590e6d9c7 New plotting reference and associated integrated dataset 2020-10-06 23:37:29 +10:00
hyginn
31c519be9f Bugfix: called the wrong function on ENSPsel in l. 220 2020-10-04 14:11:13 +10:00
hyginn
285c0db8a5 BUGFIX: variable was tested before being loaded 2020-10-03 08:57:03 +10:00
hyginn
e0ff45fe94 TBC 2020-10-02 21:15:34 +10:00
hyginn
efb52f636d specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded. 2020-10-02 20:59:29 +10:00
hyginn
152d01273f data in ./myScripts/ 2020-10-02 18:50:36 +10:00
hyginn
3173aec119 srsly: ./myScripts/ ! 2020-10-02 18:38:01 +10:00
hyginn
62cb8e42c1 put data in ./myScripts/ 2020-10-02 18:32:29 +10:00
hyginn
5ff4b3f7cb File should be in ./myScripts/... 2020-10-02 18:31:06 +10:00
hyginn
e974fbdb10 add jsonlite:: to fromjJSON() in code sample 2020-10-02 18:27:59 +10:00
hyginn
d38092f08a mRNA for Mutation-effect IA: controls 2020-10-01 18:19:59 +10:00