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data
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remove duplicate annotation
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2020-10-13 20:26:17 +10:00 |
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myScripts
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2020 updates and maintenance
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2020-09-16 16:32:51 +10:00 |
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scripts
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Bugfixes
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2020-10-13 20:27:56 +10:00 |
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tests
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New unit: RPR-Unit_tests, with sample test file and tests directory
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2017-10-15 18:46:42 -04:00 |
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.gitignore
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ignore the myScripts folder from now on
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2020-09-27 00:08:31 +10:00 |
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.myProfile.R
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update process for moving .myProfile.R
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2020-09-21 14:54:30 +10:00 |
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.notes
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cleanup
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2019-01-07 17:51:50 +10:00 |
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.Rprofile
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BUGFIX: variable was tested before being loaded
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2020-10-03 08:57:03 +10:00 |
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.tmp.R
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New workflow for Introduction
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2020-09-19 22:31:06 +10:00 |
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.utilities.R
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add sealKey()
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2020-10-12 09:16:52 +10:00 |
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ABC-addSACCE_APSESproteins.R
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Added and updated learning units
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2017-09-12 16:09:20 -04:00 |
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ABC-units.R
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2020 updates - deactivate for maintenance
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2020-09-18 21:56:30 +10:00 |
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ABC-units.Rproj
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Install files and folders
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2017-08-18 22:04:01 +02:00 |
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BIN-ALI-BLAST.R
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Update script location
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2020-09-25 21:50:42 +10:00 |
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BIN-ALI-Dotplot.R
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2020 updates - deactivate for maintenance
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2020-09-18 21:56:30 +10:00 |
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BIN-ALI-MSA.R
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specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded.
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2020-10-02 20:59:29 +10:00 |
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BIN-ALI-Optimal_sequence_alignment.R
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srsly: ./myScripts/ !
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2020-10-02 18:38:01 +10:00 |
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BIN-ALI-Similarity.R
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specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded.
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2020-10-02 20:59:29 +10:00 |
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BIN-Data_integration.R
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Updates to UniProtIDmap, and address httr/curl initialization bug
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2020-09-25 02:27:42 +10:00 |
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BIN-FUNC-Domain_annotation.R
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Add code and utility functions for database export of protein annotations to JSON - towards sharing annotations on the Student Wiki Public page
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2020-10-13 16:08:35 +10:00 |
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BIN-FUNC-Semantic_similarity.R
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Maintenance
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2020-09-25 13:20:10 +10:00 |
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BIN-MYSPE.R
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Reorganized proportional plots into a "further reading" section; added nested-box, and sankey plot visualization of proportions. Introduced plotly.
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2020-10-01 18:18:51 +10:00 |
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BIN-PHYLO-Data_preparation.R
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Maintenance
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2020-09-26 16:45:29 +10:00 |
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BIN-PHYLO-Tree_analysis.R
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Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
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2020-09-26 21:39:18 +10:00 |
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BIN-PHYLO-Tree_building.R
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add TOC
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2020-09-26 18:22:32 +10:00 |
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BIN-PPI-Analysis.R
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style
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2020-10-12 09:17:09 +10:00 |
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BIN-SEQA-Composition.R
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Maintenance. Use AACOLS.
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2020-09-25 01:50:07 +10:00 |
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BIN-Sequence.R
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Maintenace, and add a Fibonacci-sequence example
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2020-09-23 23:21:46 +10:00 |
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BIN-Storing_data.R
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add overlooked jsonlite:: prefix to fromJson()
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2020-09-28 18:00:45 +10:00 |
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FND-Genetic_code.R
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Maintenance
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2020-09-24 08:55:14 +10:00 |
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FND-MAT-Graphs_and_networks.R
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Maintenance
|
2020-09-23 13:00:38 +10:00 |
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FND-STA-Information_theory.R
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2020 updates - deactivate for maintenance
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2020-09-18 21:56:30 +10:00 |
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FND-STA-Probability_distribution.R
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Update PPI-Analysis assets and code
|
2020-09-23 20:47:26 +10:00 |
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FND-STA-Significance.R
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Maintenance and sample solutions
|
2020-09-23 06:07:40 +10:00 |
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functionTemplate.R
|
added a non-executing block for test code
|
2017-10-28 23:07:52 -04:00 |
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plottingReference.R
|
add cex examples
|
2020-10-12 09:18:10 +10:00 |
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README.md
|
2020 updates - deactivate for maintenance
|
2020-09-18 21:56:30 +10:00 |
|
RPR-Biostrings.R
|
Maintenance
|
2020-09-24 20:41:10 +10:00 |
|
RPR-ChimeraX_remote.R
|
return ChimeraX response invisibly and provide example of using the data for a plot
|
2020-09-29 14:12:11 +10:00 |
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RPR-eUtils_XML.R
|
TOC, and filename typo
|
2020-09-25 12:03:56 +10:00 |
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RPR-FASTA.R
|
update validateFASTA() logic to accommodate blanks in spacers
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2020-09-26 00:43:10 +10:00 |
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RPR-Genetic_code_optimality.R
|
Maintenance
|
2020-09-24 22:15:28 +10:00 |
|
RPR-GEO2R.R
|
Clarifications, and better color palettes for correlations
|
2020-09-25 18:51:38 +10:00 |
|
RPR-Introduction.R
|
New workflow for Introduction
|
2020-09-19 22:31:06 +10:00 |
|
RPR-PROSITE_POST.R
|
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
|
2020-09-25 11:29:28 +10:00 |
|
RPR-RegEx.R
|
2020 Maintenance
|
2020-09-22 21:02:13 +10:00 |
|
RPR-SX-PDB.R
|
stylisitc updates
|
2020-09-22 13:02:29 +10:00 |
|
RPR-UniProt_GET.R
|
updates; vectorized dbFetchUniProtSeq()
|
2020-09-25 10:47:41 +10:00 |
|
RPR-Unit_testing.R
|
Discuss code-local testing
|
2020-09-25 00:25:15 +10:00 |
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scriptTemplate.R
|
Use requireNamespace(), <package>::<function>() idiom,
|
2019-01-08 17:11:25 +10:00 |
