hyginn
|
3bee83495f
|
add cex examples
|
2020-10-12 09:18:10 +10:00 |
|
hyginn
|
0c395a1c83
|
style
|
2020-10-12 09:17:09 +10:00 |
|
hyginn
|
c064b34000
|
add sealKey()
|
2020-10-12 09:16:52 +10:00 |
|
hyginn
|
a590e6d9c7
|
New plotting reference and associated integrated dataset
|
2020-10-06 23:37:29 +10:00 |
|
hyginn
|
31c519be9f
|
Bugfix: called the wrong function on ENSPsel in l. 220
|
2020-10-04 14:11:13 +10:00 |
|
hyginn
|
285c0db8a5
|
BUGFIX: variable was tested before being loaded
|
2020-10-03 08:57:03 +10:00 |
|
hyginn
|
e0ff45fe94
|
TBC
|
2020-10-02 21:15:34 +10:00 |
|
hyginn
|
efb52f636d
|
specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded.
|
2020-10-02 20:59:29 +10:00 |
|
hyginn
|
152d01273f
|
data in ./myScripts/
|
2020-10-02 18:50:36 +10:00 |
|
hyginn
|
3173aec119
|
srsly: ./myScripts/ !
|
2020-10-02 18:38:01 +10:00 |
|
hyginn
|
62cb8e42c1
|
put data in ./myScripts/
|
2020-10-02 18:32:29 +10:00 |
|
hyginn
|
5ff4b3f7cb
|
File should be in ./myScripts/...
|
2020-10-02 18:31:06 +10:00 |
|
hyginn
|
e974fbdb10
|
add jsonlite:: to fromjJSON() in code sample
|
2020-10-02 18:27:59 +10:00 |
|
hyginn
|
d38092f08a
|
mRNA for Mutation-effect IA: controls
|
2020-10-01 18:19:59 +10:00 |
|
hyginn
|
8839248362
|
Reorganized proportional plots into a "further reading" section; added nested-box, and sankey plot visualization of proportions. Introduced plotly.
|
2020-10-01 18:18:51 +10:00 |
|
hyginn
|
8a5c5b3961
|
return taxID as name of return value
|
2020-10-01 11:18:08 +10:00 |
|
hyginn
|
39417c8e60
|
./myScripts/.myProfile.R needs to be sourced after!
.utilities.R to ensure utility functions are available.
|
2020-10-01 03:04:35 +10:00 |
|
hyginn
|
9e77d948e9
|
return ChimeraX response invisibly and provide example of using the data for a plot
|
2020-09-29 14:12:11 +10:00 |
|
hyginn
|
12e3de439f
|
add overlooked jsonlite:: prefix to fromJson()
|
2020-09-28 18:00:45 +10:00 |
|
hyginn
|
12213b73a4
|
Update to student-edited file locations
|
2020-09-28 17:49:45 +10:00 |
|
hyginn
|
744e762dc2
|
New script to demonstarte remote scripting of ChimeraX
|
2020-09-27 23:40:27 +10:00 |
|
hyginn
|
df3dbb0fb6
|
add CX() command for ChimeraX rempote control from R-scripts.
|
2020-09-27 23:40:01 +10:00 |
|
hyginn
|
0fb02b1f2f
|
ignore the myScripts folder from now on
|
2020-09-27 00:08:31 +10:00 |
|
hyginn
|
389efcdfab
|
Contents for a sample .Rmd page
|
2020-09-27 00:07:14 +10:00 |
|
hyginn
|
777cabcb20
|
Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
|
2020-09-26 21:39:18 +10:00 |
|
hyginn
|
68b00c83e8
|
add TOC
|
2020-09-26 18:22:32 +10:00 |
|
hyginn
|
b9ac373fce
|
Update - file locations and authorization of phylip apps on Mac.
|
2020-09-26 18:21:17 +10:00 |
|
hyginn
|
85b7353646
|
ignore assignment produced data/APSEStreeRproml.rds
|
2020-09-26 18:20:33 +10:00 |
|
hyginn
|
12725799e1
|
Maintenance
|
2020-09-26 16:45:29 +10:00 |
|
hyginn
|
16513dc488
|
ignore assignment file data/APSESphyloSet.mfa
|
2020-09-26 16:45:10 +10:00 |
|
hyginn
|
866a1c0e8f
|
maintenance, update file locations, minor bugs
|
2020-09-26 01:07:49 +10:00 |
|
hyginn
|
092494d9de
|
update validateFASTA() logic to accommodate blanks in spacers
|
2020-09-26 00:43:10 +10:00 |
|
hyginn
|
169ca58b92
|
Bugfix: q -> Q
|
2020-09-25 21:51:04 +10:00 |
|
hyginn
|
091880d205
|
Update script location
|
2020-09-25 21:50:42 +10:00 |
|
hyginn
|
092daaef97
|
Fix makeProteinDB.R location
|
2020-09-25 21:28:17 +10:00 |
|
hyginn
|
126f956ea7
|
update TOC
|
2020-09-25 21:07:25 +10:00 |
|
hyginn
|
85d53ae2ee
|
New AA colouring scheme - with better separation and transparent colours for overlapping plots. prcomp() analysis of amino acid similarity.
|
2020-09-25 21:06:24 +10:00 |
|
hyginn
|
069d8136e3
|
Clarifications, and better color palettes for correlations
|
2020-09-25 18:51:38 +10:00 |
|
hyginn
|
b42adac3f3
|
minor updates
|
2020-09-25 15:24:51 +10:00 |
|
hyginn
|
abe30a5fb6
|
Maintenance
|
2020-09-25 13:20:10 +10:00 |
|
hyginn
|
5a3bbc31c6
|
TOC, and filename typo
|
2020-09-25 12:03:56 +10:00 |
|
hyginn
|
404fb05c79
|
minor maintenance
|
2020-09-25 12:01:08 +10:00 |
|
hyginn
|
abb146f828
|
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
|
2020-09-25 11:29:28 +10:00 |
|
hyginn
|
36140bc984
|
updates; vectorized dbFetchUniProtSeq()
|
2020-09-25 10:47:41 +10:00 |
|
hyginn
|
2775c7c9a8
|
Updates to UniProtIDmap, and address httr/curl initialization bug
|
2020-09-25 02:27:42 +10:00 |
|
hyginn
|
f3a436cb6e
|
Maintenance. Use AACOLS.
|
2020-09-25 01:50:07 +10:00 |
|
hyginn
|
80079f9c5d
|
Discuss code-local testing
|
2020-09-25 00:25:15 +10:00 |
|
hyginn
|
1002703a80
|
Maintenance
|
2020-09-24 22:15:28 +10:00 |
|
hyginn
|
60cf30dc5a
|
Maintenance
|
2020-09-24 20:41:10 +10:00 |
|
hyginn
|
861db60879
|
cleanup after adding MYSPE to .myProfile.R
|
2020-09-24 20:16:41 +10:00 |
|