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11f97e89d5
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Added setuptools-scm
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 23:21:57 +00:00 |
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f3d152b5fa
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CLI CSV now outputs original FASTA record ID
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 23:09:02 +00:00 |
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f5608b33f9
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Removed generated file
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 22:51:38 +00:00 |
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18b003e0e2
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No more error when output folder already exists
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 22:49:00 +00:00 |
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afbd883e3e
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Updated credentials ID
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 21:30:02 +00:00 |
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cb8adac970
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Added twine to requirements
NSBDiagnosisToolkit/pipeline/head There was a failure building this commit
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2025-01-03 20:54:49 +00:00 |
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fe1112ed91
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Added a README.md
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2025-01-03 20:52:57 +00:00 |
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0a37bb5176
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Prepared software for more analysis options
NSBDiagnosisToolkit/pipeline/head This commit looks good
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2025-01-03 20:42:30 +00:00 |
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580e96c1c6
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Added shorthand command
MLSTMyFASTA/pipeline/head Something is wrong with the build of this commit
NSBDiagnosisToolkit/pipeline/head There was a failure building this commit
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2025-01-03 19:57:18 +00:00 |
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2cd56ca1ec
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Renaming project to NSBDiagnosisToolkit
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2025-01-03 19:56:55 +00:00 |
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6ff0dca3ae
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Added build tool to requirements.txt
MLSTMyFASTA/pipeline/head This commit looks good
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2025-01-03 19:50:26 +00:00 |
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7fb20415f5
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Fixed CI
MLSTMyFASTA/pipeline/head There was a failure building this commit
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2025-01-03 19:40:49 +00:00 |
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35ae4cd6c8
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Added build step to CI
MLSTMyFASTA/pipeline/head There was a failure building this commit
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2025-01-03 19:40:11 +00:00 |
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4061c3d5a0
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Added Jenkinsfile
MLSTMyFASTA/pipeline/head There was a failure building this commit
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2025-01-03 19:26:21 +00:00 |
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e9977d2da7
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Completed CLI for B. pertussis MLST typing from fasta files
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2025-01-03 19:20:19 +00:00 |
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362e0867e5
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Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying
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2025-01-03 16:41:51 +00:00 |
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b834aa93b0
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Tested annotation alignment system
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2025-01-03 14:39:18 +00:00 |
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28733337d2
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Completed untested annotation function
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2025-01-02 21:53:55 +00:00 |
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aa2d494bee
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Wrote simple annotation test
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2025-01-02 21:28:45 +00:00 |
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a9ae193cdc
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Finished function for returning feature coding
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2025-01-02 19:28:54 +00:00 |
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18a13083dc
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Added unit test for genbank fetching
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2025-01-02 18:49:23 +00:00 |
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7b079650e0
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Finished writing genbank fetching function
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2025-01-02 18:11:42 +00:00 |
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5c7a67b35e
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Began implementing necessary API calls
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2024-12-31 18:08:15 +00:00 |
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f36d5cfce0
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Generated initial files for project
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2024-12-30 21:44:47 +00:00 |
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