Generated initial files for project

This commit is contained in:
Harrison Deng 2024-12-30 21:44:47 +00:00
commit f36d5cfce0
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// For format details, see https://aka.ms/devcontainer.json. For config options, see the
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
"name": "Python 3",
// Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
"image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye",
"features": {
"ghcr.io/devcontainers/features/node:1": {}
},
"customizations": {
"vscode": {
"extensions": [
"ms-python.isort",
"njpwerner.autodocstring",
"ms-python.black-formatter",
"ms-python.pylint"
]
}
}
// Features to add to the dev container. More info: https://containers.dev/features.
// "features": {},
// Use 'forwardPorts' to make a list of ports inside the container available locally.
// "forwardPorts": [],
// Use 'postCreateCommand' to run commands after the container is created.
// "postCreateCommand": "pip3 install --user -r requirements.txt",
// Configure tool-specific properties.
// "customizations": {},
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
// "remoteUser": "root"
}

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# File created using '.gitignore Generator' for Visual Studio Code: https://bit.ly/vscode-gig
# Created by https://www.toptal.com/developers/gitignore/api/visualstudiocode,svelte,python,linux,node
# Edit at https://www.toptal.com/developers/gitignore?templates=visualstudiocode,svelte,python,linux,node
### Linux ###
*~
# temporary files which can be created if a process still has a handle open of a deleted file
.fuse_hidden*
# KDE directory preferences
.directory
# Linux trash folder which might appear on any partition or disk
.Trash-*
# .nfs files are created when an open file is removed but is still being accessed
.nfs*
### Node ###
# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
lerna-debug.log*
.pnpm-debug.log*
# Diagnostic reports (https://nodejs.org/api/report.html)
report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
# Runtime data
pids
*.pid
*.seed
*.pid.lock
# Directory for instrumented libs generated by jscoverage/JSCover
lib-cov
# Coverage directory used by tools like istanbul
coverage
*.lcov
# nyc test coverage
.nyc_output
# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
.grunt
# Bower dependency directory (https://bower.io/)
bower_components
# node-waf configuration
.lock-wscript
# Compiled binary addons (https://nodejs.org/api/addons.html)
build/Release
# Dependency directories
node_modules/
jspm_packages/
# Snowpack dependency directory (https://snowpack.dev/)
web_modules/
# TypeScript cache
*.tsbuildinfo
# Optional npm cache directory
.npm
# Optional eslint cache
.eslintcache
# Optional stylelint cache
.stylelintcache
# Microbundle cache
.rpt2_cache/
.rts2_cache_cjs/
.rts2_cache_es/
.rts2_cache_umd/
# Optional REPL history
.node_repl_history
# Output of 'npm pack'
*.tgz
# Yarn Integrity file
.yarn-integrity
# dotenv environment variable files
.env
.env.development.local
.env.test.local
.env.production.local
.env.local
# parcel-bundler cache (https://parceljs.org/)
.cache
.parcel-cache
# Next.js build output
.next
out
# Nuxt.js build / generate output
.nuxt
dist
# Gatsby files
.cache/
# Comment in the public line in if your project uses Gatsby and not Next.js
# https://nextjs.org/blog/next-9-1#public-directory-support
# public
# vuepress build output
.vuepress/dist
# vuepress v2.x temp and cache directory
.temp
# Docusaurus cache and generated files
.docusaurus
# Serverless directories
.serverless/
# FuseBox cache
.fusebox/
# DynamoDB Local files
.dynamodb/
# TernJS port file
.tern-port
# Stores VSCode versions used for testing VSCode extensions
.vscode-test
# yarn v2
.yarn/cache
.yarn/unplugged
.yarn/build-state.yml
.yarn/install-state.gz
.pnp.*
### Node Patch ###
# Serverless Webpack directories
.webpack/
# Optional stylelint cache
# SvelteKit build / generate output
.svelte-kit
### Python ###
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/
# Translations
*.mo
*.pot
# Django stuff:
local_settings.py
db.sqlite3
db.sqlite3-journal
# Flask stuff:
instance/
.webassets-cache
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
.pybuilder/
target/
# Jupyter Notebook
.ipynb_checkpoints
# IPython
profile_default/
ipython_config.py
# pyenv
# For a library or package, you might want to ignore these files since the code is
# intended to run in multiple environments; otherwise, check them in:
# .python-version
# pipenv
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
# However, in case of collaboration, if having platform-specific dependencies or dependencies
# having no cross-platform support, pipenv may install dependencies that don't work, or not
# install all needed dependencies.
#Pipfile.lock
# poetry
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
# This is especially recommended for binary packages to ensure reproducibility, and is more
# commonly ignored for libraries.
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
#poetry.lock
# pdm
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
#pdm.lock
# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
# in version control.
# https://pdm.fming.dev/#use-with-ide
.pdm.toml
# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
__pypackages__/
# Celery stuff
celerybeat-schedule
celerybeat.pid
# SageMath parsed files
*.sage.py
# Environments
.venv
env/
venv/
ENV/
env.bak/
venv.bak/
# Spyder project settings
.spyderproject
.spyproject
# Rope project settings
.ropeproject
# mkdocs documentation
/site
# mypy
.mypy_cache/
.dmypy.json
dmypy.json
# Pyre type checker
.pyre/
# pytype static type analyzer
.pytype/
# Cython debug symbols
cython_debug/
# PyCharm
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
# and can be added to the global gitignore or merged into this file. For a more nuclear
# option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/
### Python Patch ###
# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
poetry.toml
# ruff
.ruff_cache/
# LSP config files
pyrightconfig.json
### Svelte ###
# gitignore template for the SvelteKit, frontend web component framework
# website: https://kit.svelte.dev/
.svelte-kit/
package
### VisualStudioCode ###
.vscode/*
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json
!.vscode/*.code-snippets
# Local History for Visual Studio Code
.history/
# Built Visual Studio Code Extensions
*.vsix
### VisualStudioCode Patch ###
# Ignore all local history of files
.history
.ionide
# End of https://www.toptal.com/developers/gitignore/api/visualstudiocode,svelte,python,linux,node
# Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option)

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test-results
node_modules
# Output
.output
.vercel
.netlify
.wrangler
/.svelte-kit
/build
# OS
.DS_Store
Thumbs.db
# Env
.env
.env.*
!.env.example
!.env.test
# Vite
vite.config.js.timestamp-*
vite.config.ts.timestamp-*

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engine-strict=true

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# Package Managers
package-lock.json
pnpm-lock.yaml
yarn.lock

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{
"useTabs": true,
"singleQuote": true,
"trailingComma": "none",
"printWidth": 100,
"plugins": ["prettier-plugin-svelte", "prettier-plugin-tailwindcss"],
"overrides": [
{
"files": "*.svelte",
"options": {
"parser": "svelte"
}
}
]
}

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# sv
Everything you need to build a Svelte project, powered by [`sv`](https://github.com/sveltejs/cli).
## Creating a project
If you're seeing this, you've probably already done this step. Congrats!
```bash
# create a new project in the current directory
npx sv create
# create a new project in my-app
npx sv create my-app
```
## Developing
Once you've created a project and installed dependencies with `npm install` (or `pnpm install` or `yarn`), start a development server:
```bash
npm run dev
# or start the server and open the app in a new browser tab
npm run dev -- --open
```
## Building
To create a production version of your app:
```bash
npm run build
```
You can preview the production build with `npm run preview`.
> To deploy your app, you may need to install an [adapter](https://svelte.dev/docs/kit/adapters) for your target environment.

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import { expect, test } from '@playwright/test';
test('home page has expected h1', async ({ page }) => {
await page.goto('/');
await expect(page.locator('h1')).toBeVisible();
});

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import prettier from 'eslint-config-prettier';
import js from '@eslint/js';
import { includeIgnoreFile } from '@eslint/compat';
import svelte from 'eslint-plugin-svelte';
import globals from 'globals';
import { fileURLToPath } from 'node:url';
const gitignorePath = fileURLToPath(new URL('./.gitignore', import.meta.url));
/** @type {import('eslint').Linter.Config[]} */
export default [
includeIgnoreFile(gitignorePath),
js.configs.recommended,
...svelte.configs['flat/recommended'],
prettier,
...svelte.configs['flat/prettier'],
{
languageOptions: {
globals: {
...globals.browser,
...globals.node
}
}
}
];

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{
"extends": "./.svelte-kit/tsconfig.json",
"compilerOptions": {
"allowJs": true,
"checkJs": true,
"esModuleInterop": true,
"forceConsistentCasingInFileNames": true,
"resolveJsonModule": true,
"skipLibCheck": true,
"sourceMap": true,
"strict": true,
"moduleResolution": "bundler"
}
// Path aliases are handled by https://svelte.dev/docs/kit/configuration#alias
// except $lib which is handled by https://svelte.dev/docs/kit/configuration#files
//
// If you want to overwrite includes/excludes, make sure to copy over the relevant includes/excludes
// from the referenced tsconfig.json - TypeScript does not merge them in
}

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{
"name": "mlstmyfasta.client",
"private": true,
"version": "0.0.1",
"type": "module",
"scripts": {
"dev": "vite dev",
"build": "vite build",
"preview": "vite preview",
"check": "svelte-kit sync && svelte-check --tsconfig ./jsconfig.json",
"check:watch": "svelte-kit sync && svelte-check --tsconfig ./jsconfig.json --watch",
"format": "prettier --write .",
"lint": "prettier --check . && eslint .",
"test:unit": "vitest",
"test": "npm run test:unit -- --run && npm run test:e2e",
"test:e2e": "playwright test"
},
"devDependencies": {
"@eslint/compat": "^1.2.3",
"@fontsource/fira-mono": "^5.0.0",
"@neoconfetti/svelte": "^2.0.0",
"@playwright/test": "^1.45.3",
"@sveltejs/adapter-static": "^3.0.6",
"@sveltejs/kit": "^2.0.0",
"@sveltejs/vite-plugin-svelte": "^4.0.0",
"autoprefixer": "^10.4.20",
"eslint": "^9.7.0",
"eslint-config-prettier": "^9.1.0",
"eslint-plugin-svelte": "^2.36.0",
"globals": "^15.0.0",
"prettier": "^3.3.2",
"prettier-plugin-svelte": "^3.2.6",
"prettier-plugin-tailwindcss": "^0.6.5",
"svelte": "^5.0.0",
"svelte-check": "^4.0.0",
"tailwindcss": "^3.4.9",
"typescript": "^5.0.0",
"vite": "^5.4.11",
"vitest": "^2.0.4"
},
"dependencies": {
"@tailwindcss/forms": "^0.5.9",
"@tailwindcss/typography": "^0.5.15"
}
}

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import { defineConfig } from '@playwright/test';
export default defineConfig({
webServer: {
command: 'npm run build && npm run preview',
port: 4173
},
testDir: 'e2e'
});

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export default {
plugins: {
tailwindcss: {},
autoprefixer: {}
}
};

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@import 'tailwindcss/base';
@import 'tailwindcss/components';
@import 'tailwindcss/utilities';
@import '@fontsource/fira-mono';
:root {
--font-body: Arial, -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu,
Cantarell, 'Open Sans', 'Helvetica Neue', sans-serif;
--font-mono: 'Fira Mono', monospace;
--color-bg-0: rgb(202, 216, 228);
--color-bg-1: hsl(209, 36%, 86%);
--color-bg-2: hsl(224, 44%, 95%);
--color-theme-1: #ff3e00;
--color-theme-2: #4075a6;
--color-text: rgba(0, 0, 0, 0.7);
--column-width: 42rem;
--column-margin-top: 4rem;
font-family: var(--font-body);
color: var(--color-text);
}
body {
min-height: 100vh;
margin: 0;
background-attachment: fixed;
background-color: var(--color-bg-1);
background-size: 100vw 100vh;
background-image: radial-gradient(
50% 50% at 50% 50%,
rgba(255, 255, 255, 0.75) 0%,
rgba(255, 255, 255, 0) 100%
),
linear-gradient(180deg, var(--color-bg-0) 0%, var(--color-bg-1) 15%, var(--color-bg-2) 50%);
}
h1,
h2,
p {
font-weight: 400;
}
p {
line-height: 1.5;
}
a {
color: var(--color-theme-1);
text-decoration: none;
}
a:hover {
text-decoration: underline;
}
h1 {
font-size: 2rem;
text-align: center;
}
h2 {
font-size: 1rem;
}
pre {
font-size: 16px;
font-family: var(--font-mono);
background-color: rgba(255, 255, 255, 0.45);
border-radius: 3px;
box-shadow: 2px 2px 6px rgb(255 255 255 / 25%);
padding: 0.5em;
overflow-x: auto;
color: var(--color-text);
}
.text-column {
display: flex;
max-width: 48rem;
flex: 0.6;
flex-direction: column;
justify-content: center;
margin: 0 auto;
}
input,
button {
font-size: inherit;
font-family: inherit;
}
button:focus:not(:focus-visible) {
outline: none;
}
@media (min-width: 720px) {
h1 {
font-size: 2.4rem;
}
}
.visually-hidden {
border: 0;
clip: rect(0 0 0 0);
height: auto;
margin: 0;
overflow: hidden;
padding: 0;
position: absolute;
width: 1px;
white-space: nowrap;
}

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// See https://svelte.dev/docs/kit/types#app.d.ts
// for information about these interfaces
declare global {
namespace App {
// interface Error {}
// interface Locals {}
// interface PageData {}
// interface PageState {}
// interface Platform {}
}
}
export {};

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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8" />
<link rel="icon" href="%sveltekit.assets%/favicon.png" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
%sveltekit.head%
</head>
<body data-sveltekit-preload-data="hover">
<div style="display: contents">%sveltekit.body%</div>
</body>
</html>

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import { describe, it, expect } from 'vitest';
describe('sum test', () => {
it('adds 1 + 2 to equal 3', () => {
expect(1 + 2).toBe(3);
});
});

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<script>
import Header from './Header.svelte';
import '../app.css';
/** @type {{children: import('svelte').Snippet}} */
let { children } = $props();
</script>
<div class="app">
<Header />
<main>
{@render children()}
</main>
<footer>
<p>
visit <a href="https://svelte.dev/docs/kit">svelte.dev/docs/kit</a> to learn about SvelteKit
</p>
</footer>
</div>
<style>
.app {
display: flex;
flex-direction: column;
min-height: 100vh;
}
main {
flex: 1;
display: flex;
flex-direction: column;
padding: 1rem;
width: 100%;
max-width: 64rem;
margin: 0 auto;
box-sizing: border-box;
}
footer {
display: flex;
flex-direction: column;
justify-content: center;
align-items: center;
padding: 12px;
}
footer a {
font-weight: bold;
}
@media (min-width: 480px) {
footer {
padding: 12px 0;
}
}
</style>

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// since there's no dynamic data here, we can prerender
// it so that it gets served as a static asset in production
export const prerender = true;

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<script>
import Counter from './Counter.svelte';
import welcome from '$lib/images/svelte-welcome.webp';
import welcomeFallback from '$lib/images/svelte-welcome.png';
</script>
<svelte:head>
<title>Home</title>
<meta name="description" content="Svelte demo app" />
</svelte:head>
<section>
<h1>
<span class="welcome">
<picture>
<source srcset={welcome} type="image/webp" />
<img src={welcomeFallback} alt="Welcome" />
</picture>
</span>
to your new<br />SvelteKit app
</h1>
<h2>
try editing <strong>src/routes/+page.svelte</strong>
</h2>
<Counter />
</section>
<style>
section {
display: flex;
flex-direction: column;
justify-content: center;
align-items: center;
flex: 0.6;
}
h1 {
width: 100%;
}
.welcome {
display: block;
position: relative;
width: 100%;
height: 0;
padding: 0 0 calc(100% * 495 / 2048) 0;
}
.welcome img {
position: absolute;
width: 100%;
height: 100%;
top: 0;
display: block;
}
</style>

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<script>
import { spring } from 'svelte/motion';
let count = $state(0);
// svelte-ignore state_referenced_locally
const displayedCount = spring(count);
$effect(() => {
displayedCount.set(count);
});
let offset = $derived(modulo($displayedCount, 1));
/**
* @param {number} n
* @param {number} m
*/
function modulo(n, m) {
// handle negative numbers
return ((n % m) + m) % m;
}
</script>
<div class="counter">
<button onclick={() => (count -= 1)} aria-label="Decrease the counter by one">
<svg aria-hidden="true" viewBox="0 0 1 1">
<path d="M0,0.5 L1,0.5" />
</svg>
</button>
<div class="counter-viewport">
<div class="counter-digits" style="transform: translate(0, {100 * offset}%)">
<strong class="hidden" aria-hidden="true">{Math.floor($displayedCount + 1)}</strong>
<strong>{Math.floor($displayedCount)}</strong>
</div>
</div>
<button onclick={() => (count += 1)} aria-label="Increase the counter by one">
<svg aria-hidden="true" viewBox="0 0 1 1">
<path d="M0,0.5 L1,0.5 M0.5,0 L0.5,1" />
</svg>
</button>
</div>
<style>
.counter {
display: flex;
border-top: 1px solid rgba(0, 0, 0, 0.1);
border-bottom: 1px solid rgba(0, 0, 0, 0.1);
margin: 1rem 0;
}
.counter button {
width: 2em;
padding: 0;
display: flex;
align-items: center;
justify-content: center;
border: 0;
background-color: transparent;
touch-action: manipulation;
font-size: 2rem;
}
.counter button:hover {
background-color: var(--color-bg-1);
}
svg {
width: 25%;
height: 25%;
}
path {
vector-effect: non-scaling-stroke;
stroke-width: 2px;
stroke: #444;
}
.counter-viewport {
width: 8em;
height: 4em;
overflow: hidden;
text-align: center;
position: relative;
}
.counter-viewport strong {
position: absolute;
display: flex;
width: 100%;
height: 100%;
font-weight: 400;
color: var(--color-theme-1);
font-size: 4rem;
align-items: center;
justify-content: center;
}
.counter-digits {
position: absolute;
width: 100%;
height: 100%;
}
.hidden {
top: -100%;
user-select: none;
}
</style>

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<script>
import { page } from '$app/stores';
import logo from '$lib/images/svelte-logo.svg';
import github from '$lib/images/github.svg';
</script>
<header>
<div class="corner">
<a href="https://svelte.dev/docs/kit">
<img src={logo} alt="SvelteKit" />
</a>
</div>
<nav>
<svg viewBox="0 0 2 3" aria-hidden="true">
<path d="M0,0 L1,2 C1.5,3 1.5,3 2,3 L2,0 Z" />
</svg>
<ul>
<li aria-current={$page.url.pathname === '/' ? 'page' : undefined}>
<a href="/">Home</a>
</li>
<li aria-current={$page.url.pathname === '/about' ? 'page' : undefined}>
<a href="/about">About</a>
</li>
<li aria-current={$page.url.pathname.startsWith('/sverdle') ? 'page' : undefined}>
<a href="/sverdle">Sverdle</a>
</li>
</ul>
<svg viewBox="0 0 2 3" aria-hidden="true">
<path d="M0,0 L0,3 C0.5,3 0.5,3 1,2 L2,0 Z" />
</svg>
</nav>
<div class="corner">
<a href="https://github.com/sveltejs/kit">
<img src={github} alt="GitHub" />
</a>
</div>
</header>
<style>
header {
display: flex;
justify-content: space-between;
}
.corner {
width: 3em;
height: 3em;
}
.corner a {
display: flex;
align-items: center;
justify-content: center;
width: 100%;
height: 100%;
}
.corner img {
width: 2em;
height: 2em;
object-fit: contain;
}
nav {
display: flex;
justify-content: center;
--background: rgba(255, 255, 255, 0.7);
}
svg {
width: 2em;
height: 3em;
display: block;
}
path {
fill: var(--background);
}
ul {
position: relative;
padding: 0;
margin: 0;
height: 3em;
display: flex;
justify-content: center;
align-items: center;
list-style: none;
background: var(--background);
background-size: contain;
}
li {
position: relative;
height: 100%;
}
li[aria-current='page']::before {
--size: 6px;
content: '';
width: 0;
height: 0;
position: absolute;
top: 0;
left: calc(50% - var(--size));
border: var(--size) solid transparent;
border-top: var(--size) solid var(--color-theme-1);
}
nav a {
display: flex;
height: 100%;
align-items: center;
padding: 0 0.5rem;
color: var(--color-text);
font-weight: 700;
font-size: 0.8rem;
text-transform: uppercase;
letter-spacing: 0.1em;
text-decoration: none;
transition: color 0.2s linear;
}
a:hover {
color: var(--color-theme-1);
}
</style>

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import { dev } from '$app/environment';
// we don't need any JS on this page, though we'll load
// it in dev so that we get hot module replacement
export const csr = dev;
// since there's no dynamic data here, we can prerender
// it so that it gets served as a static asset in production
export const prerender = true;

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<svelte:head>
<title>About</title>
<meta name="description" content="About this app" />
</svelte:head>
<div class="text-column">
<h1>About this app</h1>
<p>
This is a <a href="https://svelte.dev/docs/kit">SvelteKit</a> app. You can make your own by typing
the following into your command line and following the prompts:
</p>
<pre>npx sv create</pre>
<p>
The page you're looking at is purely static HTML, with no client-side interactivity needed.
Because of that, we don't need to load any JavaScript. Try viewing the page's source, or opening
the devtools network panel and reloading.
</p>
<p>
The <a href="/sverdle">Sverdle</a> page illustrates SvelteKit's data loading and form handling. Try
using it with JavaScript disabled!
</p>
</div>

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import { fail } from '@sveltejs/kit';
import { Game } from './game';
/** @satisfies {import('./$types').PageServerLoad} */
export const load = ({ cookies }) => {
const game = new Game(cookies.get('sverdle'));
return {
/**
* The player's guessed words so far
*/
guesses: game.guesses,
/**
* An array of strings like '__x_c' corresponding to the guesses, where 'x' means
* an exact match, and 'c' means a close match (right letter, wrong place)
*/
answers: game.answers,
/**
* The correct answer, revealed if the game is over
*/
answer: game.answers.length >= 6 ? game.answer : null
};
};
/** @satisfies {import('./$types').Actions} */
export const actions = {
/**
* Modify game state in reaction to a keypress. If client-side JavaScript
* is available, this will happen in the browser instead of here
*/
update: async ({ request, cookies }) => {
const game = new Game(cookies.get('sverdle'));
const data = await request.formData();
const key = data.get('key');
const i = game.answers.length;
if (key === 'backspace') {
game.guesses[i] = game.guesses[i].slice(0, -1);
} else {
game.guesses[i] += key;
}
cookies.set('sverdle', game.toString(), { path: '/' });
},
/**
* Modify game state in reaction to a guessed word. This logic always runs on
* the server, so that people can't cheat by peeking at the JavaScript
*/
enter: async ({ request, cookies }) => {
const game = new Game(cookies.get('sverdle'));
const data = await request.formData();
const guess = /** @type {string[]} */ (data.getAll('guess'));
if (!game.enter(guess)) {
return fail(400, { badGuess: true });
}
cookies.set('sverdle', game.toString(), { path: '/' });
},
restart: async ({ cookies }) => {
cookies.delete('sverdle', { path: '/' });
}
};

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<script>
import { enhance } from '$app/forms';
import { confetti } from '@neoconfetti/svelte';
import { reducedMotion } from './reduced-motion';
/**
* @typedef {Object} Props
* @property {import('./$types').PageData} data
* @property {import('./$types').ActionData} form
*/
/**
* @type {Props}
*/
let { data, form = $bindable() } = $props();
/** Whether or not the user has won */
let won = $derived(data.answers.at(-1) === 'xxxxx');
/** The index of the current guess */
let i = $derived(won ? -1 : data.answers.length);
/** The current guess */
// svelte-ignore state_referenced_locally
let currentGuess = $state(data.guesses[i] || '');
$effect(() => {
currentGuess = data.guesses[i] || '';
});
/** Whether the current guess can be submitted */
let submittable = $derived(currentGuess.length === 5);
const { classnames, description } = $derived.by(() => {
/**
* A map of classnames for all letters that have been guessed,
* used for styling the keyboard
* @type {Record<string, 'exact' | 'close' | 'missing'>}
*/
let classnames = {};
/**
* A map of descriptions for all letters that have been guessed,
* used for adding text for assistive technology (e.g. screen readers)
* @type {Record<string, string>}
*/
let description = {};
data.answers.forEach((answer, i) => {
const guess = data.guesses[i];
for (let i = 0; i < 5; i += 1) {
const letter = guess[i];
if (answer[i] === 'x') {
classnames[letter] = 'exact';
description[letter] = 'correct';
} else if (!classnames[letter]) {
classnames[letter] = answer[i] === 'c' ? 'close' : 'missing';
description[letter] = answer[i] === 'c' ? 'present' : 'absent';
}
}
});
return { classnames, description };
});
/**
* Modify the game state without making a trip to the server,
* if client-side JavaScript is enabled
* @param {MouseEvent} event
*/
function update(event) {
event.preventDefault();
const key = /** @type {HTMLButtonElement} */ (event.target).getAttribute('data-key');
if (key === 'backspace') {
currentGuess = currentGuess.slice(0, -1);
if (form?.badGuess) form.badGuess = false;
} else if (currentGuess.length < 5) {
currentGuess += key;
}
}
/**
* Trigger form logic in response to a keydown event, so that
* desktop users can use the keyboard to play the game
* @param {KeyboardEvent} event
*/
function keydown(event) {
if (event.metaKey) return;
if (event.key === 'Enter' && !submittable) return;
document
.querySelector(`[data-key="${event.key}" i]`)
?.dispatchEvent(new MouseEvent('click', { cancelable: true }));
}
</script>
<svelte:window onkeydown={keydown} />
<svelte:head>
<title>Sverdle</title>
<meta name="description" content="A Wordle clone written in SvelteKit" />
</svelte:head>
<h1 class="visually-hidden">Sverdle</h1>
<form
method="post"
action="?/enter"
use:enhance={() => {
// prevent default callback from resetting the form
return ({ update }) => {
update({ reset: false });
};
}}
>
<a class="how-to-play" href="/sverdle/how-to-play">How to play</a>
<div class="grid" class:playing={!won} class:bad-guess={form?.badGuess}>
{#each Array.from(Array(6).keys()) as row (row)}
{@const current = row === i}
<h2 class="visually-hidden">Row {row + 1}</h2>
<div class="row" class:current>
{#each Array.from(Array(5).keys()) as column (column)}
{@const guess = current ? currentGuess : data.guesses[row]}
{@const answer = data.answers[row]?.[column]}
{@const value = guess?.[column] ?? ''}
{@const selected = current && column === guess.length}
{@const exact = answer === 'x'}
{@const close = answer === 'c'}
{@const missing = answer === '_'}
<div class="letter" class:exact class:close class:missing class:selected>
{value}
<span class="visually-hidden">
{#if exact}
(correct)
{:else if close}
(present)
{:else if missing}
(absent)
{:else}
empty
{/if}
</span>
<input name="guess" disabled={!current} type="hidden" {value} />
</div>
{/each}
</div>
{/each}
</div>
<div class="controls">
{#if won || data.answers.length >= 6}
{#if !won && data.answer}
<p>the answer was "{data.answer}"</p>
{/if}
<button data-key="enter" class="restart selected" formaction="?/restart">
{won ? 'you won :)' : `game over :(`} play again?
</button>
{:else}
<div class="keyboard">
<button data-key="enter" class:selected={submittable} disabled={!submittable}>enter</button>
<button
onclick={update}
data-key="backspace"
formaction="?/update"
name="key"
value="backspace"
>
back
</button>
{#each ['qwertyuiop', 'asdfghjkl', 'zxcvbnm'] as row}
<div class="row">
{#each row as letter}
<button
onclick={update}
data-key={letter}
class={classnames[letter]}
disabled={submittable}
formaction="?/update"
name="key"
value={letter}
aria-label="{letter} {description[letter] || ''}"
>
{letter}
</button>
{/each}
</div>
{/each}
</div>
{/if}
</div>
</form>
{#if won}
<div
style="position: absolute; left: 50%; top: 30%"
use:confetti={{
particleCount: $reducedMotion ? 0 : undefined,
force: 0.7,
stageWidth: window.innerWidth,
stageHeight: window.innerHeight,
colors: ['#ff3e00', '#40b3ff', '#676778']
}}
></div>
{/if}
<style>
form {
width: 100%;
height: 100%;
display: flex;
flex-direction: column;
align-items: center;
justify-content: center;
gap: 1rem;
flex: 1;
}
.how-to-play {
color: var(--color-text);
}
.how-to-play::before {
content: 'i';
display: inline-block;
font-size: 0.8em;
font-weight: 900;
width: 1em;
height: 1em;
padding: 0.2em;
line-height: 1;
border: 1.5px solid var(--color-text);
border-radius: 50%;
text-align: center;
margin: 0 0.5em 0 0;
position: relative;
top: -0.05em;
}
.grid {
--width: min(100vw, 40vh, 380px);
max-width: var(--width);
align-self: center;
justify-self: center;
width: 100%;
height: 100%;
display: flex;
flex-direction: column;
justify-content: flex-start;
}
.grid .row {
display: grid;
grid-template-columns: repeat(5, 1fr);
grid-gap: 0.2rem;
margin: 0 0 0.2rem 0;
}
@media (prefers-reduced-motion: no-preference) {
.grid.bad-guess .row.current {
animation: wiggle 0.5s;
}
}
.grid.playing .row.current {
filter: drop-shadow(3px 3px 10px var(--color-bg-0));
}
.letter {
aspect-ratio: 1;
width: 100%;
display: flex;
align-items: center;
justify-content: center;
text-align: center;
box-sizing: border-box;
text-transform: lowercase;
border: none;
font-size: calc(0.08 * var(--width));
border-radius: 2px;
background: white;
margin: 0;
color: rgba(0, 0, 0, 0.7);
}
.letter.missing {
background: rgba(255, 255, 255, 0.5);
color: rgba(0, 0, 0, 0.5);
}
.letter.exact {
background: var(--color-theme-2);
color: white;
}
.letter.close {
border: 2px solid var(--color-theme-2);
}
.selected {
outline: 2px solid var(--color-theme-1);
}
.controls {
text-align: center;
justify-content: center;
height: min(18vh, 10rem);
}
.keyboard {
--gap: 0.2rem;
position: relative;
display: flex;
flex-direction: column;
gap: var(--gap);
height: 100%;
}
.keyboard .row {
display: flex;
justify-content: center;
gap: 0.2rem;
flex: 1;
}
.keyboard button,
.keyboard button:disabled {
--size: min(8vw, 4vh, 40px);
background-color: white;
color: black;
width: var(--size);
border: none;
border-radius: 2px;
font-size: calc(var(--size) * 0.5);
margin: 0;
}
.keyboard button.exact {
background: var(--color-theme-2);
color: white;
}
.keyboard button.missing {
opacity: 0.5;
}
.keyboard button.close {
border: 2px solid var(--color-theme-2);
}
.keyboard button:focus {
background: var(--color-theme-1);
color: white;
outline: none;
}
.keyboard button[data-key='enter'],
.keyboard button[data-key='backspace'] {
position: absolute;
bottom: 0;
width: calc(1.5 * var(--size));
height: calc(1 / 3 * (100% - 2 * var(--gap)));
text-transform: uppercase;
font-size: calc(0.3 * var(--size));
padding-top: calc(0.15 * var(--size));
}
.keyboard button[data-key='enter'] {
right: calc(50% + 3.5 * var(--size) + 0.8rem);
}
.keyboard button[data-key='backspace'] {
left: calc(50% + 3.5 * var(--size) + 0.8rem);
}
.keyboard button[data-key='enter']:disabled {
opacity: 0.5;
}
.restart {
width: 100%;
padding: 1rem;
background: rgba(255, 255, 255, 0.5);
border-radius: 2px;
border: none;
}
.restart:focus,
.restart:hover {
background: var(--color-theme-1);
color: white;
outline: none;
}
@keyframes wiggle {
0% {
transform: translateX(0);
}
10% {
transform: translateX(-2px);
}
30% {
transform: translateX(4px);
}
50% {
transform: translateX(-6px);
}
70% {
transform: translateX(+4px);
}
90% {
transform: translateX(-2px);
}
100% {
transform: translateX(0);
}
}
</style>

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import { words, allowed } from './words.server';
export class Game {
/**
* Create a game object from the player's cookie, or initialise a new game
* @param {string | undefined} serialized
*/
constructor(serialized = undefined) {
if (serialized) {
const [index, guesses, answers] = serialized.split('-');
this.index = +index;
this.guesses = guesses ? guesses.split(' ') : [];
this.answers = answers ? answers.split(' ') : [];
} else {
this.index = Math.floor(Math.random() * words.length);
this.guesses = ['', '', '', '', '', ''];
this.answers = /** @type {string[]} */ ([]);
}
this.answer = words[this.index];
}
/**
* Update game state based on a guess of a five-letter word. Returns
* true if the guess was valid, false otherwise
* @param {string[]} letters
*/
enter(letters) {
const word = letters.join('');
const valid = allowed.has(word);
if (!valid) return false;
this.guesses[this.answers.length] = word;
const available = Array.from(this.answer);
const answer = Array(5).fill('_');
// first, find exact matches
for (let i = 0; i < 5; i += 1) {
if (letters[i] === available[i]) {
answer[i] = 'x';
available[i] = ' ';
}
}
// then find close matches (this has to happen
// in a second step, otherwise an early close
// match can prevent a later exact match)
for (let i = 0; i < 5; i += 1) {
if (answer[i] === '_') {
const index = available.indexOf(letters[i]);
if (index !== -1) {
answer[i] = 'c';
available[index] = ' ';
}
}
}
this.answers.push(answer.join(''));
return true;
}
/**
* Serialize game state so it can be set as a cookie
*/
toString() {
return `${this.index}-${this.guesses.join(' ')}-${this.answers.join(' ')}`;
}
}

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import { dev } from '$app/environment';
// we don't need any JS on this page, though we'll load
// it in dev so that we get hot module replacement
export const csr = dev;
// since there's no dynamic data here, we can prerender
// it so that it gets served as a static asset in production
export const prerender = true;

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<svelte:head>
<title>How to play Sverdle</title>
<meta name="description" content="How to play Sverdle" />
</svelte:head>
<div class="text-column">
<h1>How to play Sverdle</h1>
<p>
Sverdle is a clone of <a href="https://www.nytimes.com/games/wordle/index.html">Wordle</a>, the
word guessing game. To play, enter a five-letter English word. For example:
</p>
<div class="example">
<span class="close">r</span>
<span class="missing">i</span>
<span class="close">t</span>
<span class="missing">z</span>
<span class="exact">y</span>
</div>
<p>
The <span class="exact">y</span> is in the right place. <span class="close">r</span> and
<span class="close">t</span>
are the right letters, but in the wrong place. The other letters are wrong, and can be discarded.
Let's make another guess:
</p>
<div class="example">
<span class="exact">p</span>
<span class="exact">a</span>
<span class="exact">r</span>
<span class="exact">t</span>
<span class="exact">y</span>
</div>
<p>This time we guessed right! You have <strong>six</strong> guesses to get the word.</p>
<p>
Unlike the original Wordle, Sverdle runs on the server instead of in the browser, making it
impossible to cheat. It uses <code>&lt;form&gt;</code> and cookies to submit data, meaning you can
even play with JavaScript disabled!
</p>
</div>
<style>
span {
display: inline-flex;
justify-content: center;
align-items: center;
font-size: 0.8em;
width: 2.4em;
height: 2.4em;
background-color: white;
box-sizing: border-box;
border-radius: 2px;
border-width: 2px;
color: rgba(0, 0, 0, 0.7);
}
.missing {
background: rgba(255, 255, 255, 0.5);
color: rgba(0, 0, 0, 0.5);
}
.close {
border-style: solid;
border-color: var(--color-theme-2);
}
.exact {
background: var(--color-theme-2);
color: white;
}
.example {
display: flex;
justify-content: flex-start;
margin: 1rem 0;
gap: 0.2rem;
}
.example span {
font-size: 1.4rem;
}
p span {
position: relative;
border-width: 1px;
border-radius: 1px;
font-size: 0.4em;
transform: scale(2) translate(0, -10%);
margin: 0 1em;
}
</style>

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import { readable } from 'svelte/store';
import { browser } from '$app/environment';
const reducedMotionQuery = '(prefers-reduced-motion: reduce)';
const getInitialMotionPreference = () => {
if (!browser) return false;
return window.matchMedia(reducedMotionQuery).matches;
};
export const reducedMotion = readable(getInitialMotionPreference(), (set) => {
if (browser) {
/**
* @param {MediaQueryListEvent} event
*/
const setReducedMotion = (event) => {
set(event.matches);
};
const mediaQueryList = window.matchMedia(reducedMotionQuery);
mediaQueryList.addEventListener('change', setReducedMotion);
return () => {
mediaQueryList.removeEventListener('change', setReducedMotion);
};
}
});

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# https://www.robotstxt.org/robotstxt.html
User-agent: *
Disallow:

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import adapter from '@sveltejs/adapter-static';
/** @type {import('@sveltejs/kit').Config} */
const config = {
kit: {
// adapter-auto only supports some environments, see https://svelte.dev/docs/kit/adapter-auto for a list.
// If your environment is not supported, or you settled on a specific environment, switch out the adapter.
// See https://svelte.dev/docs/kit/adapters for more information about adapters.
adapter: adapter()
}
};
export default config;

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import forms from '@tailwindcss/forms';
import typography from '@tailwindcss/typography';
/** @type {import('tailwindcss').Config} */
export default {
content: ['./src/**/*.{html,js,svelte,ts}'],
theme: {
extend: {}
},
plugins: [typography, forms]
};

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import { defineConfig } from 'vitest/config';
import { sveltekit } from '@sveltejs/kit/vite';
export default defineConfig({
plugins: [sveltekit()],
test: {
include: ['src/**/*.{test,spec}.{js,ts}']
}
});

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[metadata]
name = mlstmyfasta.server
[options]
package_dir =
= src
install_requires =
sqlalchemy ==2.0
flask-sqlalchemy ==3.0
flask ==2.3
pyvcf3 ==1
requests ==2.29
cachier ==2.1
biopython ==1.81
scipy ==1.10
spacy ==3.4
matplotlib ==3.7
cupy ==12.1
en-core-sci-lg ==0.5.1
scispacy ==0.5.2
[tool:pytest]
pythonpath = src
testpaths = tests
log_cli = 1
[pylint]
max-line-length = 88
[isort]
profile = black