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• 11f97e89d5 Added setuptools-scm develop Harrison Deng 2025-01-03 23:21:57 +00:00
• f3d152b5fa CLI CSV now outputs original FASTA record ID Harrison Deng 2025-01-03 23:09:02 +00:00
• f5608b33f9 Removed generated file main Harrison Deng 2025-01-03 22:51:38 +00:00
• 18b003e0e2 No more error when output folder already exists Harrison Deng 2025-01-03 22:49:00 +00:00
• afbd883e3e Updated credentials ID Harrison Deng 2025-01-03 21:30:02 +00:00
• cb8adac970 Added twine to requirements Harrison Deng 2025-01-03 20:54:49 +00:00
• fe1112ed91 Added a README.md Harrison Deng 2025-01-03 20:52:57 +00:00
• 0a37bb5176 Prepared software for more analysis options Harrison Deng 2025-01-03 20:42:30 +00:00
• 580e96c1c6 Added shorthand command Harrison Deng 2025-01-03 19:57:18 +00:00
• 2cd56ca1ec Renaming project to NSBDiagnosisToolkit Harrison Deng 2025-01-03 19:56:55 +00:00
• 6ff0dca3ae Added build tool to requirements.txt Harrison Deng 2025-01-03 19:50:26 +00:00
• 7fb20415f5 Fixed CI Harrison Deng 2025-01-03 19:40:49 +00:00
• 35ae4cd6c8 Added build step to CI Harrison Deng 2025-01-03 19:40:11 +00:00
• 4061c3d5a0 Added Jenkinsfile Harrison Deng 2025-01-03 19:26:21 +00:00
• e9977d2da7 Completed CLI for B. pertussis MLST typing from fasta files Harrison Deng 2025-01-03 19:20:19 +00:00
• 362e0867e5 Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying Harrison Deng 2025-01-03 16:41:51 +00:00
• b834aa93b0 Tested annotation alignment system Harrison Deng 2025-01-03 14:39:18 +00:00
• 28733337d2 Completed untested annotation function Harrison Deng 2025-01-02 21:53:55 +00:00
• aa2d494bee Wrote simple annotation test Harrison Deng 2025-01-02 21:28:45 +00:00
• a9ae193cdc Finished function for returning feature coding Harrison Deng 2025-01-02 19:28:54 +00:00
• 18a13083dc Added unit test for genbank fetching Harrison Deng 2025-01-02 18:49:23 +00:00
• 7b079650e0 Finished writing genbank fetching function Harrison Deng 2025-01-02 18:11:42 +00:00
• 5c7a67b35e Began implementing necessary API calls Harrison Deng 2024-12-31 18:08:15 +00:00
• f36d5cfce0 Generated initial files for project Harrison Deng 2024-12-30 21:44:47 +00:00