Commit Graph

41 Commits

Author SHA1 Message Date
hyginn
b748c1264c Add selectPDBrep() function to select random, representative PDB IDs 2017-10-21 21:00:18 -04:00
hyginn
d28536b395 Data files for ABC-INT-Mutation_impact integrator unit 2017-10-17 07:32:01 -04:00
hyginn
a942bef91e New unit 2017-10-15 23:40:13 -04:00
hyginn
05958349cf New unit: RPR-Unit_tests, with sample test file and tests directory 2017-10-15 18:46:42 -04:00
hyginn
c148d95071 updates to biCode() function - handle NA and short input 2017-10-15 18:44:06 -04:00
hyginn
153e7dcf00 Update: FASTA files may contain gap and stop characters 2017-10-14 18:26:16 -04:00
hyginn
d9e7813d27 Code and data for RPR-FASTA 2017-10-14 18:25:46 -04:00
hyginn
edb245f818 Comments on "incomplete final line" warning 2017-10-12 21:50:30 -04:00
hyginn
bd79626a3d clarifications 2017-10-12 15:14:46 -04:00
hyginn
98cd17bfe0 New unit code 2017-10-12 15:11:38 -04:00
hyginn
0c069a66ca add ID mapping instructions 2017-10-09 17:32:07 -04:00
hyginn
32a45fc059 Add UniProtIDmap() function 2017-10-08 15:59:56 -04:00
hyginn
59a1341796 New unit 2017-10-08 15:59:36 -04:00
hyginn
96e559429d S. cerevisae cell cycle subnetwork edge-list 2017-10-07 13:57:55 -04:00
hyginn
7ed5309901 Supporting script to create a cell cycle subset from STRING data. Used for FND-MAT-Graphs_and_networks deliverables 2017-10-07 11:52:33 -04:00
hyginn
f2e1f4ca83 First live version 2017-10-07 11:51:08 -04:00
hyginn
27dd73664b add httr and xml2 package, add scripted data download functions 2017-10-06 08:51:12 -04:00
hyginn
b33feed50a Add code for scripting data download unit 2017-10-06 08:49:43 -04:00
hyginn
4fb2506e58 refactor biCode to bring it in line with current coding standards 2017-10-06 08:49:10 -04:00
hyginn
9ac45565f4 Changing "YFO" to "MYSPE" 2017-10-03 23:38:48 -04:00
hyginn
a83f2166a5 Fixed typo 2017-10-03 10:40:22 -04:00
hyginn
38e5822ac7 New unit - regex practice and sample file 2017-10-02 14:51:11 -04:00
hyginn
64dfed2daf Update: chartr() 2017-10-02 14:50:33 -04:00
hyginn
e34460cd44 Update version 2017-09-29 12:26:22 -04:00
hyginn
e1dbd1d268 update function to remove FASTA headers (line-break terminated substrings that begin with a ">") 2017-09-29 12:25:00 -04:00
hyginn
3b5e65aa8d New unit 2017-09-29 12:23:57 -04:00
hyginn
8462b7d336 Genetic code unit and data 2017-09-28 09:19:59 -04:00
hyginn
131ec842e4 JSON data sources 2017-09-25 01:32:41 -04:00
hyginn
6cb8fa16c9 Obsolete 2017-09-25 01:32:05 -04:00
hyginn
95accd9608 new scripts 2017-09-25 01:31:40 -04:00
hyginn
6a565c2ab6 New unit 2017-09-25 01:30:29 -04:00
hyginn
abe1c4974c Obsolete 2017-09-25 01:30:15 -04:00
hyginn
e1679d8d07 Update for dbUtilities 2017-09-25 01:29:43 -04:00
hyginn
ebc35d1e29 added data directory 2017-09-21 17:50:33 -04:00
hyginn
a88e1acca1 Updates 2017-09-21 17:50:16 -04:00
hyginn
ce3a17da6d New code for YFO list and BLAST 2017-09-21 17:49:55 -04:00
hyginn
ad783c1254 Added BLAST wait-timer 2017-09-21 17:49:15 -04:00
hyginn
1bb04b8bec Added and updated learning units 2017-09-12 16:09:20 -04:00
hyginn
f0440b0a39 Update 2017-08-18 22:07:29 +02:00
hyginn
7c47af1b3d Install files and folders 2017-08-18 22:04:01 +02:00
Boris Steipe
114ea02adb Initial commit 2017-08-18 21:51:33 +02:00