JSON data sources
This commit is contained in:
hyginn
parent
6cb8fa16c9
commit
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20
data/MBP1_SACCE.json
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20
data/MBP1_SACCE.json
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@ -0,0 +1,20 @@
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[
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{ "name" : "MBP1_SACCE",
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"RefSeqID" : "NP_010227",
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"UniProtID" : "P39678",
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"taxonomyID" : 559292,
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"sequence" : [
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"MSNQIYSARYSGVDVYEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGF",
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"GKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDGSASPPPAPKHHHASKVDRKKAIRSASTSAIMET",
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"KRNNKKAEENQFQSSKILGNPTAAPRKRGRPVGSTRGSRRKLGVNLQRSQSDMGFPRPAIPNSSISTTQL",
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"PSIRSTMGPQSPTLGILEEERHDSRQQQPQQNNSAQFKEIDLEDGLSSDVEPSQQLQQVFNQNTGFVPQQ",
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"QSSLIQTQQTESMATSVSSSPSLPTSPGDFADSNPFEERFPGGGTSPIISMIPRYPVTSRPQTSDINDKV",
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"NKYLSKLVDYFISNEMKSNKSLPQVLLHPPPHSAPYIDAPIDPELHTAFHWACSMGNLPIAEALYEAGTS",
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"IRSTNSQGQTPLMRSSLFHNSYTRRTFPRIFQLLHETVFDIDSQSQTVIHHIVKRKSTTPSAVYYLDVVL",
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"SKIKDFSPQYRIELLLNTQDKNGDTALHIASKNGDVVFFNTLVKMGALTTISNKEGLTANEIMNQQYEQM",
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"MIQNGTNQHVNSSNTDLNIHVNTNNIETKNDVNSMVIMSPVSPSDYITYPSQIATNISRNIPNVVNSMKQ",
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"MASIYNDLHEQHDNEIKSLQKTLKSISKTKIQVSLKTLEVLKESSKDENGEAQTNDDFEILSRLQEQNTK",
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"KLRKRLIRYKRLIKQKLEYRQTVLLNKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNKLSS",
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"LVKKFEDNAKIHKYRRIIREGTEMNIEEVDSSLDVILQTLIANNNKNKGAEQIITISNANSHA"]
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}
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]
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115
data/refAnnotations.json
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115
data/refAnnotations.json
Normal file
@ -0,0 +1,115 @@
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[
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{"pName" : "MBP1_SACCE", "fName" : "APSES fold", "start" : "4", "end" : "102"},
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{"pName" : "MBP1_SACCE", "fName" : "KilA-N", "start" : "22", "end" : "105"},
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{"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "108", "end" : "122"},
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{"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "236", "end" : "241"},
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{"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "279", "end" : "307"},
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{"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "700", "end" : "717"},
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{"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "700", "end" : "717"},
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{"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "394", "end" : "423"},
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{"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "427", "end" : "463"},
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{"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "512", "end" : "541"},
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{"pName" : "MBP1_SACCE", "fName" : "Swi6 fold", "start" : "381", "end" : "547"},
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{"pName" : "MBP1_SACCE", "fName" : "coiled coil", "start" : "633", "end" : "655"},
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{"pName" : "MBP1_ASPNI", "fName" : "APSES fold", "start" : "9", "end" : "106"},
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{"pName" : "MBP1_ASPNI", "fName" : "KilA-N", "start" : "26", "end" : "109"},
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{"pName" : "MBP1_ASPNI", "fName" : "low complexity", "start" : "529", "end" : "534"},
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{"pName" : "MBP1_ASPNI", "fName" : "Ankyrin fold", "start" : "260", "end" : "289"},
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{"pName" : "MBP1_ASPNI", "fName" : "Ankyrin fold", "start" : "381", "end" : "413"},
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{"pName" : "MBP1_ASPNI", "fName" : "Swi6 fold", "start" : "193", "end" : "402"},
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{"pName" : "MBP1_ASPNI", "fName" : "coiled coil", "start" : "509", "end" : "572"},
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{"pName" : "MBP1_BIPOR", "fName" : "APSES fold", "start" : "8", "end" : "106"},
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{"pName" : "MBP1_BIPOR", "fName" : "KilA-N", "start" : "26", "end" : "109"},
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{"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "134", "end" : "152"},
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{"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "267", "end" : "278"},
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{"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "670", "end" : "685"},
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{"pName" : "MBP1_BIPOR", "fName" : "Ankyrin fold", "start" : "266", "end" : "295"},
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{"pName" : "MBP1_BIPOR", "fName" : "Ankyrin fold", "start" : "387", "end" : "416"},
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{"pName" : "MBP1_BIPOR", "fName" : "Swi6 fold", "start" : "253", "end" : "421"},
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{"pName" : "MBP1_BIPOR", "fName" : "coiled coil", "start" : "659", "end" : "681"},
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{"pName" : "MBP1_BIPOR", "fName" : "coiled coil", "start" : "500", "end" : "590"},
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{"pName" : "MBP1_NEUCR", "fName" : "APSES fold", "start" : "14", "end" : "114"},
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{"pName" : "MBP1_NEUCR", "fName" : "KilA-N", "start" : "34", "end" : "117"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "130", "end" : "141"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "253", "end" : "266"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "514", "end" : "525"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "554", "end" : "564"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "601", "end" : "618"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "620", "end" : "629"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "636", "end" : "652"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "658", "end" : "672"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "725", "end" : "735"},
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{"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "752", "end" : "771"},
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{"pName" : "MBP1_NEUCR", "fName" : "Ankyrin fold", "start" : "268", "end" : "297"},
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{"pName" : "MBP1_NEUCR", "fName" : "Ankyrin fold", "start" : "390", "end" : "419"},
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{"pName" : "MBP1_NEUCR", "fName" : "Swi6 fold", "start" : "270", "end" : "426"},
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{"pName" : "MBP1_NEUCR", "fName" : "coiled coil", "start" : "500", "end" : "550"},
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{"pName" : "MBP1_SCHPO", "fName" : "APSES fold", "start" : "8", "end" : "104"},
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{"pName" : "MBP1_SCHPO", "fName" : "KilA-N", "start" : "25", "end" : "113"},
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{"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "111", "end" : "125"},
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{"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "136", "end" : "145"},
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{"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "176", "end" : "191"},
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{"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "422", "end" : "447"},
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{"pName" : "MBP1_SCHPO", "fName" : "Ankyrin fold", "start" : "247", "end" : "276"},
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{"pName" : "MBP1_SCHPO", "fName" : "Ankyrin fold", "start" : "368", "end" : "397"},
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{"pName" : "MBP1_SCHPO", "fName" : "Swi6 fold", "start" : "234", "end" : "400"},
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{"pName" : "MBP1_SCHPO", "fName" : "coiled coil", "start" : "457", "end" : "538"},
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{"pName" : "MBP1_COPCI", "fName" : "APSES fold", "start" : "5", "end" : "103"},
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{"pName" : "MBP1_COPCI", "fName" : "KilA-N", "start" : "23", "end" : "106"},
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{"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "170", "end" : "191"},
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{"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "435", "end" : "450"},
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{"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "611", "end" : "626"},
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{"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "270", "end" : "299"},
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{"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "389", "end" : "418"},
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{"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "474", "end" : "509"},
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{"pName" : "MBP1_COPCI", "fName" : "Swi6 fold", "start" : "257", "end" : "429"},
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{"pName" : "MBP1_COPCI", "fName" : "coiled coil", "start" : "500", "end" : "570"},
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{"pName" : "MBP1_COPCI", "fName" : "coiled coil", "start" : "651", "end" : "678"},
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{"pName" : "MBP1_CRYNE", "fName" : "APSES fold", "start" : "113", "end" : "211"},
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{"pName" : "MBP1_CRYNE", "fName" : "KilA-N", "start" : "131", "end" : "215"},
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{"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "66", "end" : "85"},
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{"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "413", "end" : "423"},
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{"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "633", "end" : "644"},
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{"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "697", "end" : "709"},
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{"pName" : "MBP1_CRYNE", "fName" : "Ankyrin fold", "start" : "477", "end" : "506"},
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{"pName" : "MBP1_CRYNE", "fName" : "Ankyrin fold", "start" : "618", "end" : "647"},
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{"pName" : "MBP1_CRYNE", "fName" : "Swi6 fold", "start" : "452", "end" : "663"},
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{"pName" : "MBP1_PUCGR", "fName" : "APSES fold", "start" : "90", "end" : "187"},
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{"pName" : "MBP1_PUCGR", "fName" : "KilA-N", "start" : "107", "end" : "190"},
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{"pName" : "MBP1_PUCGR", "fName" : "low complexity", "start" : "208", "end" : "227"},
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{"pName" : "MBP1_PUCGR", "fName" : "low complexity", "start" : "273", "end" : "291"},
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{"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "442", "end" : "271"},
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{"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "475", "end" : "509"},
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{"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "561", "end" : "590"},
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{"pName" : "MBP1_PUCGR", "fName" : "Swi6 fold", "start" : "429", "end" : "601"},
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{"pName" : "MBP1_PUCGR", "fName" : "coiled coil", "start" : "827", "end" : "863"},
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{"pName" : "MBP1_USTMA", "fName" : "APSES fold", "start" : "7", "end" : "104"},
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{"pName" : "MBP1_USTMA", "fName" : "KilA-N", "start" : "24", "end" : "107"},
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{"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "106", "end" : "116"},
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{"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "161", "end" : "183"},
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{"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "657", "end" : "672"},
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{"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "776", "end" : "796"},
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{"pName" : "MBP1_USTMA", "fName" : "Ankyrin fold", "start" : "245", "end" : "274"},
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{"pName" : "MBP1_USTMA", "fName" : "Ankyrin fold", "start" : "355", "end" : "384"},
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{"pName" : "MBP1_USTMA", "fName" : "Swi6 fold", "start" : "232", "end" : "395"},
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{"pName" : "MBP1_USTMA", "fName" : "coiled coil", "start" : "581", "end" : "609"},
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{"pName" : "MBP1_WALME", "fName" : "APSES fold", "start" : "6", "end" : "103"},
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{"pName" : "MBP1_WALME", "fName" : "KilA-N", "start" : "23", "end" : "106"},
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{"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "149", "end" : "162"},
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{"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "171", "end" : "188"},
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{"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "618", "end" : "628"},
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{"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "634", "end" : "660"},
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{"pName" : "MBP1_WALME", "fName" : "Ankyrin fold", "start" : "250", "end" : "279"},
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{"pName" : "MBP1_WALME", "fName" : "Ankyrin fold", "start" : "369", "end" : "398"},
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{"pName" : "MBP1_WALME", "fName" : "Swi6 fold", "start" : "237", "end" : "409"},
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{"pName" : "MBP1_WALME", "fName" : "coiled coil", "start" : "461", "end" : "585"}
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]
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47
data/refFeatures.json
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47
data/refFeatures.json
Normal file
@ -0,0 +1,47 @@
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[
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{ "name" : "APSES fold",
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"description " : "DNA binding domain by similarity to structure",
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"sourceDB" : "PDB",
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"accession" : "1BM8_A_1_99"},
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{ "name" : "KilA-N",
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"description " : "DNA binding domain by Pfam annotation",
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"sourceDB" : "Pfam",
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"accession" : "PF04383"},
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{ "name" : "AT hook",
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"description " : "DNA interaction motif by SMART annotation",
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"sourceDB" : "SMART",
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"accession" : null},
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{ "name" : "low complexity",
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"description " : "SEG annotation by SMART",
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"sourceDB" : "SMART",
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"accession" : null},
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{ "name" : "Ankyrin fold",
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"description " : "Ankyrin domain by SMART annotation",
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"sourceDB" : "SMART",
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"accession" : "SM00248"},
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{ "name" : "Swi6 fold",
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"description " : "Swi6 fold by similarity to structure",
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"sourceDB" : "PDB",
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"accession" : "1SW6_B"},
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{ "name" : "coiled coil",
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"description " : "Coiled coil by SMART annotation",
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"sourceDB" : "SMART",
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"accession" : null},
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{ "name" : "McInerny 2011",
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"description " : "Yeast cell cycle review",
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"sourceDB" : "PubMed",
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"accession" : "21310294"}
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]
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155
data/refProteins.json
Normal file
155
data/refProteins.json
Normal file
@ -0,0 +1,155 @@
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[
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{ "name" : "MBP1_SCHPO",
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"RefSeqID" : "NP_593032",
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"UniProtID" : "P41412",
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"taxonomyID" : 284812,
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"sequence" : [
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"MAPRSSAVHVAVYSGVEVYECFIKGVSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQ",
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"GGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEGKAIAPKKKQTKQKKPSVRGRRGRKPSSLSS",
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"STLHSVNEKQPNSSISPTIESSMNKVNLPGAEEQVSATPLPASPNALLSPNDNTIKPVEELGMLEAPLDK",
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"YEESLLDFFLHPEEGRIPSFLYSPPPDFQVNSVIDDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRL",
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"SQTPLMRSVIFTNNYDCQTFGQVLELLQSTIYAVDTNGQSIFHHIVQSTSTPSKVAAAKYYLDCILEKLI",
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"SIQPFENVVRLVNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHSLL",
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"QSNSNASHSAFSFSGISPAIISPSCSSHAFVKAIPSISSKFSQLAEEYESQLREKEEDLIRANRLKQDTL",
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||||
"NEISRTYQELTFLQKNNPTYSQSMENLIREAQETYQQLSKRLLIWLEARQIFDLERSLKPHTSLSISFPS",
|
||||
"DFLKKEDGLSLNNDFKKPACNNVTNSDEYEQLINKLTSLQASRKKDTLYIRKLYEELGIDDTVNSYRRLI",
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"AMSCGINPEDLSLEILDAVEEALTREK"]
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},
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{ "name" : "MBP1_ASPNI",
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"RefSeqID" : "XP_660758",
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"UniProtID" : "Q5B8H6",
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"taxonomyID" : 227321,
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"sequence" : [
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"MAAVDFSNVYSATYSSVPVYEFKIGTDSVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKV",
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"QGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVAGDRSPPPAPKHTSAASKPRAPKINKRVVKEDV",
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||||
"FSAVNHHRSMGPPSFHHEHYDVNTGLDEDESIEQATLESSSMIADEDMISMSQNGPYSSRKRKRGINEVA",
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||||
"AMSLSEQEHILYGDQLLDYFMTVGDAPEATRIPPPQPPANFQVDRPIDDSGNTALHWACAMGDLEIVKDL",
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||||
"LRRGADMKALSIHEETPLVRAVLFTNNYEKRTFPALLDLLLDTISFRDWFGATLFHHIAQTTKSKGKWKS",
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||||
"SRYYCEVALEKLRTTFSPEEVDLLLSCQDSVGDTAVLVAARNGVFRLVDLLLSRCPRAGDLVNKRGETAS",
|
||||
"SIMQRAHLAERDIPPPPSSITMGNDHIDGEVGAPTSLEPQSVTLHHESSPATAQLLSQIGAIMAEASRKL",
|
||||
"TSSYGAAKPSQKDSDDVANPEALYEQLEQDRQKIRRQYDALAAKEAAEESSDAQLGRYEQMRDNYESLLE",
|
||||
"QIQRARLKERLASTPVPTQTAVIGSSSPEQDRLLTTFQLSRALCSEQKIRRAAVKELAQQRADAGVSTKF",
|
||||
"DVHRKLVALATGLKEEELDPMAAELAETLEFDRMNGKGVGPESPEADHKDSASLPFPGPVVSVDA"]
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},
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||||
{ "name" : "MBP1_BIPOR",
|
||||
"RefSeqID" : "XP_007682304",
|
||||
"UniProtID" : "W6ZM86",
|
||||
"taxonomyID" : 930090,
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||||
"sequence" : [
|
||||
"MPPAPDGKIYSATYSNVPVYECNVNGHHVMRRRADDWINATHILKVADYDKPARTRILEREVQKGVHEKV",
|
||||
"QGGYGKYQGTWIPLEEGRGLAERNGVLDKMRAIFDYVPGDRSPPPAPKHATAASNRMKPPRQTAAAVAAA",
|
||||
"AVAAAAAAAAVANHNALMSNSRSQASEDPYENSQRSQIYREDTPDNETVISESMLGDADLMDMSQYSADG",
|
||||
"NRKRKRGMDQMSLLDQQHQIWADQLLDYFMLLDHEAAVSWPEPPPSINLDRPIDEKGHAAMHWAAAMGDV",
|
||||
"GVVKELIHRGARLDCLSNNLETPLMRAVMFTNNFDKETMPSMVKIFQQTVHRTDWFGSTVFHHIAATTSS",
|
||||
"SNKYVCARWYLDCIINKLSETWIPEEVTRLLNAADQNGDTAIMIAARNGARKCVRSLLGRNVAVDIPNKK",
|
||||
"GETADDLIRELNQRRRMHGRTRQASSSPFAPAPEHRLNGHVPHFDGGPLMSVPVPSMAVRESVQYRSQTA",
|
||||
"SHLMTKVAPTLLEKCEELATAYEAELQEKEAEFFDAERVVKRRQAELEAVRKQVAELQSMSKGLHIDLND",
|
||||
"EEAERQQEDELRLLVEEAESLLEIEQKAELRRLCSSMPQQNSDSSPVDITEKMRLALLLHRAQLERRELV",
|
||||
"REVVGNLSVAGMSEKQGTYKKLIAKALGEREEDVESMLPEILQELEEAETQERAEGLDGSPV"]
|
||||
},
|
||||
{ "name" : "MBP1_NEUCR",
|
||||
"RefSeqID" : "XP_955821",
|
||||
"UniProtID" : "Q7RW59",
|
||||
"taxonomyID" : 367110,
|
||||
"sequence" : [
|
||||
"MVKENVGGNPEPGIYSATYSGIPVWEYQFGVDLKEHVMRRRHDDWVNATHILKAAGFDKPARTRILEREV",
|
||||
"QKDTHEKIQGGYGRYQGTWIPLEQAEALARRNNIYERLKPIFEFQPGNESPPPAPRHASKPKAPKVKPAV",
|
||||
"PTWGSKSAKNANPPQPGTFLPPGRKGLPAQAPDYNDADTHMHDDDTPDNLTVASASYMAEDDRYDHSHFS",
|
||||
"TGHRKRKRDELIEDMTEQQHAVYGDELLDYFLLSRNEQPAVRPDPPPNFKPDWPIDNERHTCLHWASAMG",
|
||||
"DVDVMRQLKKFGASLDAQNVRGETPFMRAVNFTNCFEKQTFPQVMKELFSTIDCRDLSGCTVIHHAAVMK",
|
||||
"IGRVNSQSCSRYYLDIILNRLQETHHPEFVQQLLDAQDNDGNTAVHLAAMRDARKCIRALLGRGASTDIP",
|
||||
"NKQGIRAEELIKELNASISKSRSNLPQRSSSPFAPDTQRHDAFHEAISESMVTSRKNSQPNYSSDAANTV",
|
||||
"QNRITPLVLQKLKDLTATYDSEFKEKDDAEKEARRILNKTQSELKALTASIDDYNSRLDTDDVAAKTAAE",
|
||||
"MATARHKVLAFVTHQNRISVQEAVKQELAALDRANAVTNGTSTKSKSSSPSKKPKLSPIPDQKDKPPKDE",
|
||||
"NETESEAEHPDPPAAQAHQQQPGPSSQDTEVEDQDREEEEDDYTHRLSLAAELRSILQEQRSAENDYVEA",
|
||||
"RGMLGTGERIDKYKHLLMSCLPPDEQENLEENLEEMIKLMEQEDESVTDLPAGAVGGGGGGNAADGSGGG",
|
||||
"GQPSNGRRESVLPALRGGNGDGEMSRRGSRTAAAAAAQVDGEREINGRAGAERTERIQEIAAV"]
|
||||
},
|
||||
{ "name" : "MBP1_COPCI",
|
||||
"RefSeqID" : "XP_001837394",
|
||||
"UniProtID" : "A8NYC6",
|
||||
"taxonomyID" : 240176,
|
||||
"sequence" : [
|
||||
"MPEAQIFKATYSGIPVYEMMCKGVAVMRRRSDSWLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGG",
|
||||
"YGKYQGTWIPLERGMQLAKQYNCEHLLRPIIEFTPAAKSPPLAPKHLVATAGNRPVRKPLTTDLSAAVIN",
|
||||
"TRSTRKQVADGVGEESDHDTHSLRGSEDGSMTPSPSEASSSSRTPSPIHSPGTYHSNGLDGPSSGGRNRY",
|
||||
"RQSNDRYDEDDDASRHNGMGDPRSYGDQILEYFISDTNQIPPILITPPPDFDPNMAIDDDGHTSLHWACA",
|
||||
"MGRIRIVKLLLSAGADIFKVNKAGQTALMRSVMFANNYDVRKFPELYELLHRSTLNIDNSNRTVFHHVVD",
|
||||
"VAMSKGKTHAARYYMETILTRLADYPKELADVINFQDEDGETALTMAARCRSKRLVKLLIDHGADPKINN",
|
||||
"HDGKNAEDYILEDERFRSSPAPSSRVAAMSYRNAQVAYPPPGAPSTYSFAPANHDRPPLHYSAAAQKAST",
|
||||
"RCVNDMASMLDSLAASFDQELRDKERDMAQAQALLTNIQAEILESQRTVLQLRQQAEGLSQAKQRLADLE",
|
||||
"NALQDKMGRRYRLGFEKWIKDEETREKVIRDAANGDLVLTPATTSYTVDEDGDSDSGSNGDKNKGKRKAQ",
|
||||
"VQQEEVSDLVELYSNIPTDPEELRKQCEALREEVSQSRKRRKAMFDELVTFQAEAGTSGRMSDYRRLIAA",
|
||||
"GCGGLEPLEIDSVLGMLLETLEAEDPSSTSATWSGSKGQQTG"]
|
||||
},
|
||||
{ "name" : "MBP1_CRYNE",
|
||||
"RefSeqID" : "XP_569090",
|
||||
"UniProtID" : "Q5KMQ9",
|
||||
"taxonomyID" : 214684,
|
||||
"sequence" : [
|
||||
"MGKKVIASGGDNGPNTIYKATYSGVPVYEMVCRDVAVMRRRSDAYLNATQILKVAGFDKPQRTRVLEREV",
|
||||
"QKGEHEKVQGGYGKYQGTWIPIERGLALAKQYGVEDILRPIIDYVPTSVSPPPAPKHSVAPPSKARRDKE",
|
||||
"KETGRTKATPSRTGPTSAAALQAQAQLNRAKMHDSTPDADASFRSFEERVSLTPEDDSSSDTPSPVASVM",
|
||||
"TDQDMEVDKMGMHMSMPNVTLSQNMEELGAGSRKRSAAMMMEDEDQFGQLRSIRGNSAVHTPHGTPRHLG",
|
||||
"IGMPPEPIGPEQYTDIILNYFVSETSQIPSILVSPPHDFDPNAPIDDDGHTALHWACAMGRVRVVKLLLT",
|
||||
"AGASIFAGNNAEQTPLMRSVMFSNNYDMRKFPELYELLHRSTLNIDKQNRTVFHHIANLALTKGKTHAAK",
|
||||
"YYMETILARLADYPQELADVINFQDEEGETALTIAARARSRRLVKALLDHGANPKIKNRDSRSAEDYILE",
|
||||
"DERFRSSPVPAPNGGIGKASTSAAAEKPLFAPQLYFSEAARLCGGQALTDITSHMQSLARSFDAELQGKE",
|
||||
"RDILQAKALLTNIHTEVTENGRSITAITNQAAPLEEKRRELEALQASLKTRVKDALKKGYIGWLEGELVR",
|
||||
"EQRWENGELEGNEEEKAAVQALRDVPTGGQEVVQAEEEKLRWEIEEKRKRRAMFVEKFVRAQTEAGTSEQ",
|
||||
"IAKYRKLVSAGLGGVSTNEVDELMNQLLEGLEEENDNQVYNTTAGESGPSSWVQ"]
|
||||
},
|
||||
{ "name" : "MBP1_PUCGR",
|
||||
"RefSeqID" : "XP_003327086",
|
||||
"UniProtID" : "E3KED4",
|
||||
"taxonomyID" : 418459,
|
||||
"sequence" : [
|
||||
"MAYGGSIQPLRPPSRESATLHLHQPDLTVTSPPLSLTHCPPCVYSHFTHTPTSLIVIQVSLHSLLDQETY",
|
||||
"HLLPSRSPPTVSVRMGTTTIYKATYSGVPVLEMPCEGIAVMRRRSDSWLNATQILKVAGFDKPQRTRVLE",
|
||||
"REIQKGTHEKIQGGYGKYQGTWVPLDRGIDLAKQYGVDHLLSALFNFQPSSNESPPLAPKHVTALSTRVK",
|
||||
"VSKVSAASAARAARAVVPSLPSTSGLGGRNTNNSWSNFDSDNEPGLPPAASSRESNGNWATQSKLARSSN",
|
||||
"LARARANINNSHPEDLPVPAPDQLQASPLPSMQTADPENDNSLTPSELSLPSRTPSPIEDLPLTVNTASS",
|
||||
"QSTRNKGKSRDLPDDEDLSRGQKRKYDTSLVEDTSYSDGADDQYINGNPSNAASAKYAKLILDYFVSESS",
|
||||
"QIPNFLNDPPSDFDPNVVIDDDGHTALHWACAMGRIKIIKLLLTCGADIFRANNAGQTALMRAVMFTNNH",
|
||||
"DLRTFPELFESFSGSVINIDRTDRTVFHYVIDIALTKGKVPAARYYLETILSQLSEYPKELIDILNFQDE",
|
||||
"DGETALTLAARCRSKKLVKILLDHGANPKTANRDGKSAEDYILEDDKFRALSPTPCSSGPIRQLDQNSPG",
|
||||
"GTSNRSDFVDLVDPVPIDSNLIPQRSPNASPPHYSETGQRVTKQLLPEVTSMIELLATTFDTELQDKERD",
|
||||
"LDHAVGLLSNIEKEYLEGQRKILNYERMLSDFGEKKLALGDLEKELNDKLGKRYRFGWEKYVRDEEERAR",
|
||||
"RITEQRSKYLQELSIEDRKLLDSSNLRFADPSKQEVLMKLQADERENSDLLNLIRTNSTDVESECDLLRE",
|
||||
"SVQKLSEERERLFKEFINLSSENTGGENEEDDGANHTSANTSRLNNYRKLISLGCGGIGLDEVDEVIESL",
|
||||
"NEGIDVNELNDNGFLTEQDEELGNHQNYHNIHTQGR"]
|
||||
},
|
||||
{ "name" : "MBP1_USTMA",
|
||||
"RefSeqID" : "XP_011392621",
|
||||
"UniProtID" : "A0A0D1DP35",
|
||||
"taxonomyID" : 237631,
|
||||
"sequence" : [
|
||||
"MSGDKTIFKATYSGVPVYECIINNVAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQG",
|
||||
"GYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPSAADSPPPAPKHTISTSNRSKKIIPADPGALGRS",
|
||||
"RRATSIETESEVIGAAPNNVSEGSMSPSPSDISSSSRTPSPLPADRAHPLHANHALAGYNGRDANNHARY",
|
||||
"ADIILDYFVTENTTVPSLLINPPPDFNPDMSIDDDEHTALHWACAMGRIRVVKLLLSAGADIFRVNSNQQ",
|
||||
"TALMRATMFSNNYDLRKFPELFELLHRSILNIDRNDRTVFHHVVDLALSRGKPHAARYYMETMINRLADY",
|
||||
"GDQLADILNFQDDEGETPLTMAARARSKRLVRLLLEHGADPKIRNKEGKNAEDYIIEDERFRSSPSRTGP",
|
||||
"AGIELGADGLPVLPTSSLHTSEAGQRTAGRAVTLMSNLLHSLADSYDSEINTAEKKLTQAHGLLKQIQTE",
|
||||
"IEDSAKVAEALHHEAQGVDEERKRVDSLQLALKHAINKRARDDLERRWSEGKQAIKRARLQAGLEPGALS",
|
||||
"TSNATNAPATGDQKSKDDAKSLIEALPAGTNVKTAIAELRKQLSQVQANKTELVDKFVARAREQGTGRTM",
|
||||
"AAYRRLIAAGCGGIAPDEVDAVVGVLCELLQESHTGARAGAGGERDDRARDVAMMLKGAGAAALAANAGA",
|
||||
"P"]
|
||||
},
|
||||
{ "name" : "MBP1_WALME",
|
||||
"RefSeqID" : "XP_006957051",
|
||||
"UniProtID" : "I4YGC0",
|
||||
"taxonomyID" : 671144,
|
||||
"sequence" : [
|
||||
"MSAPPIYKACYSGVPVYEFNCKNVAVMKRRSDSWMNATQILKVANFDKPQRTRILEREVQKGTHEKVQGG",
|
||||
"YGKYQGTWIPMERSVELARQYRIELLLDPIINYLPGPQSPPLAPKHATNVGSRARKSTAPAAQTLPSTSK",
|
||||
"VFHPLSSTKHPAKLAAATNAKAEISDGEDASIPSSPSFKSNSSRTPSPIRINARKRKLEDEATIPSSAID",
|
||||
"GSISYEDIILDYFISESTQIPALLIHPPSDFNPNMSIDDEGHTAMHWACAMGKVRVVKLLLSAGADIFRV",
|
||||
"NHSEQTALMRSVMFSNNYDIRKFPQLYELLHRSTLNLDKHDRTVLHHIVDLALTKSKTHAARYYMECVLS",
|
||||
"KLANYPDELADVINFQDDEGESALTLAARARSKRLVKLLLEHGADSKLPNKDGKTAEDYILEDERFRQSP",
|
||||
"LLNSNHLRLHPPDTSIYAPPAHLFNSETSQNIANTSMSSVANLLESLAQSYDKEITQKERDYQQAQVILR",
|
||||
"NIKTDIVEAKSNIEKMTIDSSEFEHLKHKLRELEMKLEEHSNDVYNKGWEEYSRNVDDPAIDAPSDNVQE",
|
||||
"ECASLRNKIKDLQEKRISSMQELIKRQKEVGTGKKMSEYRKLISVGCGIPTTEIDAVLEMLLESLESENA",
|
||||
"NKKAALASGISGALSSTSSAPSQATTSAPTGVATPGAPVPASSEKAGLLPPAPVMQ"]
|
||||
}
|
||||
]
|
||||
22
data/refTaxonomy.json
Normal file
22
data/refTaxonomy.json
Normal file
@ -0,0 +1,22 @@
|
||||
[
|
||||
{ "ID" : 227321,
|
||||
"species" : "Aspergillus nidulans FGSC A4"},
|
||||
{ "ID" : 930090,
|
||||
"species" : "Bipolaris oryzae ATCC 44560"},
|
||||
{ "ID" : 367110,
|
||||
"species" : "Neurospora crassa OR74A"},
|
||||
{ "ID" : 559292,
|
||||
"species" : "Saccharomyces cerevisiae S288C"},
|
||||
{ "ID" : 284812,
|
||||
"species" : "Schizosaccharomyces pombe 972h-"},
|
||||
{ "ID" : 240176,
|
||||
"species" : "Coprinopsis cinerea okayama7#130"},
|
||||
{ "ID" : 214684,
|
||||
"species" : "Cryptococcus neoformans var. neoformans JEC21"},
|
||||
{ "ID" : 418459,
|
||||
"species" : "Puccinia graminis f. sp. tritici CRL 75-36-700-3"},
|
||||
{ "ID" : 237631,
|
||||
"species" : "Ustilago maydis 521"},
|
||||
{ "ID" : 671144,
|
||||
"species" : "Wallemia mellicola CBS 633.66"}
|
||||
]
|
||||
115
data/referenceDomainAnnotations.txt
Normal file
115
data/referenceDomainAnnotations.txt
Normal file
@ -0,0 +1,115 @@
|
||||
ID protein.ID feature.ID start end note
|
||||
# MBP1_SACCE
|
||||
NA ref_pro_4 ref_ftr_1 4 102 APSES fold
|
||||
NA ref_pro_4 ref_ftr_2 22 105 KilA-N
|
||||
NA ref_pro_4 ref_ftr_4 108 122 low complexity
|
||||
NA ref_pro_4 ref_ftr_4 236 241 low complexity
|
||||
NA ref_pro_4 ref_ftr_4 279 307 low complexity
|
||||
NA ref_pro_4 ref_ftr_4 700 717 low complexity
|
||||
NA ref_pro_4 ref_ftr_4 700 717 low complexity
|
||||
NA ref_pro_4 ref_ftr_5 394 423 Ankyrin
|
||||
NA ref_pro_4 ref_ftr_5 427 463 Ankyrin
|
||||
NA ref_pro_4 ref_ftr_5 512 541 Ankyrin
|
||||
NA ref_pro_4 ref_ftr_6 381 547 Swi6 fold
|
||||
NA ref_pro_4 ref_ftr_7 633 655 coiled coil
|
||||
# MBP1_ASPNI
|
||||
NA ref_pro_1 ref_ftr_1 9 106 APSES fold
|
||||
NA ref_pro_1 ref_ftr_2 26 109 KilA-N
|
||||
NA ref_pro_1 ref_ftr_4 529 534 low complexity
|
||||
NA ref_pro_1 ref_ftr_5 260 289 Ankyrin
|
||||
NA ref_pro_1 ref_ftr_5 381 413 Ankyrin
|
||||
NA ref_pro_1 ref_ftr_6 193 402 Swi6 fold
|
||||
NA ref_pro_1 ref_ftr_7 509 572 coiled coil
|
||||
# MBP1_BIPOR
|
||||
NA ref_pro_2 ref_ftr_1 8 106 APSES fold
|
||||
NA ref_pro_2 ref_ftr_2 26 109 KilA-N
|
||||
NA ref_pro_2 ref_ftr_4 134 152 low complexity
|
||||
NA ref_pro_2 ref_ftr_4 267 278 low complexity
|
||||
NA ref_pro_2 ref_ftr_4 670 685 low complexity
|
||||
NA ref_pro_2 ref_ftr_5 266 295 Ankyrin
|
||||
NA ref_pro_2 ref_ftr_5 387 416 Ankyrin
|
||||
NA ref_pro_2 ref_ftr_6 253 421 Swi6 fold
|
||||
NA ref_pro_2 ref_ftr_7 659 681 coiled coil
|
||||
NA ref_pro_2 ref_ftr_7 500 590 coiled coil
|
||||
# MBP1_NEUCR
|
||||
NA ref_pro_3 ref_ftr_1 14 114 APSES fold
|
||||
NA ref_pro_3 ref_ftr_2 34 117 KilA-N
|
||||
NA ref_pro_3 ref_ftr_4 130 141 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 253 266 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 514 525 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 554 564 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 601 618 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 620 629 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 636 652 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 658 672 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 725 735 low complexity
|
||||
NA ref_pro_3 ref_ftr_4 752 771 low complexity
|
||||
NA ref_pro_3 ref_ftr_5 268 297 Ankyrin
|
||||
NA ref_pro_3 ref_ftr_5 390 419 Ankyrin
|
||||
NA ref_pro_3 ref_ftr_6 270 426 Swi6 fold
|
||||
NA ref_pro_3 ref_ftr_7 500 550 coiled coil
|
||||
# MBP1_SCHPO
|
||||
NA ref_pro_5 ref_ftr_1 8 104 APSES fold
|
||||
NA ref_pro_5 ref_ftr_2 25 113 KilA-N
|
||||
NA ref_pro_5 ref_ftr_4 111 125 low complexity
|
||||
NA ref_pro_5 ref_ftr_4 136 145 low complexity
|
||||
NA ref_pro_5 ref_ftr_4 176 191 low complexity
|
||||
NA ref_pro_5 ref_ftr_4 422 447 low complexity
|
||||
NA ref_pro_5 ref_ftr_5 247 276 Ankyrin
|
||||
NA ref_pro_5 ref_ftr_5 368 397 Ankyrin
|
||||
NA ref_pro_5 ref_ftr_6 234 400 Swi6 fold
|
||||
NA ref_pro_5 ref_ftr_7 457 538 coiled coil
|
||||
# MBP1_COPCI
|
||||
NA ref_pro_6 ref_ftr_1 5 103 APSES fold
|
||||
NA ref_pro_6 ref_ftr_2 23 106 KilA-N
|
||||
NA ref_pro_6 ref_ftr_4 170 191 low complexity
|
||||
NA ref_pro_6 ref_ftr_4 435 450 low complexity
|
||||
NA ref_pro_6 ref_ftr_4 611 626 low complexity
|
||||
NA ref_pro_6 ref_ftr_5 270 299 Ankyrin
|
||||
NA ref_pro_6 ref_ftr_5 389 418 Ankyrin
|
||||
NA ref_pro_6 ref_ftr_5 474 509 Ankyrin
|
||||
NA ref_pro_6 ref_ftr_6 257 429 Swi6 fold
|
||||
NA ref_pro_6 ref_ftr_7 500 570 coiled coil
|
||||
NA ref_pro_6 ref_ftr_7 651 678 coiled coil
|
||||
# MBP1_CRYNE
|
||||
NA ref_pro_7 ref_ftr_1 113 211 APSES fold
|
||||
NA ref_pro_7 ref_ftr_2 131 215 KilA-N
|
||||
NA ref_pro_7 ref_ftr_4 66 85 low complexity
|
||||
NA ref_pro_7 ref_ftr_4 413 423 low complexity
|
||||
NA ref_pro_7 ref_ftr_4 633 644 low complexity
|
||||
NA ref_pro_7 ref_ftr_4 697 709 low complexity
|
||||
NA ref_pro_7 ref_ftr_5 477 506 Ankyrin
|
||||
NA ref_pro_7 ref_ftr_5 618 647 Ankyrin
|
||||
NA ref_pro_7 ref_ftr_6 452 663 Swi6 fold
|
||||
# MBP1_PUCGR
|
||||
NA ref_pro_8 ref_ftr_1 90 187 APSES fold
|
||||
NA ref_pro_8 ref_ftr_2 107 190 KilA-N
|
||||
NA ref_pro_8 ref_ftr_4 208 227 low complexity
|
||||
NA ref_pro_8 ref_ftr_4 273 291 low complexity
|
||||
NA ref_pro_8 ref_ftr_5 442 271 Ankyrin
|
||||
NA ref_pro_8 ref_ftr_5 475 509 Ankyrin
|
||||
NA ref_pro_8 ref_ftr_5 561 590 Ankyrin
|
||||
NA ref_pro_8 ref_ftr_6 429 601 Swi6 fold
|
||||
NA ref_pro_8 ref_ftr_7 827 863 coiled coil
|
||||
# MBP1_USTMA
|
||||
NA ref_pro_9 ref_ftr_1 7 104 APSES fold
|
||||
NA ref_pro_9 ref_ftr_2 24 107 KilA-N
|
||||
NA ref_pro_9 ref_ftr_4 106 116 low complexity
|
||||
NA ref_pro_9 ref_ftr_4 161 183 low complexity
|
||||
NA ref_pro_9 ref_ftr_4 657 672 low complexity
|
||||
NA ref_pro_9 ref_ftr_4 776 796 low complexity
|
||||
NA ref_pro_9 ref_ftr_5 245 274 Ankyrin
|
||||
NA ref_pro_9 ref_ftr_5 355 384 Ankyrin
|
||||
NA ref_pro_9 ref_ftr_6 232 395 Swi6 fold
|
||||
NA ref_pro_9 ref_ftr_7 581 609 coiled coil
|
||||
# MBP1_WALME
|
||||
NA ref_pro_10 ref_ftr_1 6 103 APSES fold
|
||||
NA ref_pro_10 ref_ftr_2 23 106 KilA-N
|
||||
NA ref_pro_10 ref_ftr_4 149 162 low complexity
|
||||
NA ref_pro_10 ref_ftr_4 171 188 low complexity
|
||||
NA ref_pro_10 ref_ftr_4 618 628 low complexity
|
||||
NA ref_pro_10 ref_ftr_4 634 660 low complexity
|
||||
NA ref_pro_10 ref_ftr_5 250 279 Ankyrin
|
||||
NA ref_pro_10 ref_ftr_5 369 398 Ankyrin
|
||||
NA ref_pro_10 ref_ftr_6 237 409 Swi6 fold
|
||||
NA ref_pro_10 ref_ftr_7 461 585 coiled coil
|
||||
Loading…
Reference in New Issue
Block a user