ydeng/bch441-work-abc-units

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hyginn b748c1264c Add selectPDBrep() function to select random, representative PDB IDs

2017-10-21 21:00:18 -04:00

data

Data files for ABC-INT-Mutation_impact integrator unit

2017-10-17 07:32:01 -04:00

scripts

Update: FASTA files may contain gap and stop characters

2017-10-14 18:26:16 -04:00

tests

New unit: RPR-Unit_tests, with sample test file and tests directory

2017-10-15 18:46:42 -04:00

.gitignore

Update

2017-08-18 22:07:29 +02:00

.init.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

.Rprofile

Install files and folders

2017-08-18 22:04:01 +02:00

.tmp.R

Install files and folders

2017-08-18 22:04:01 +02:00

.utilities.R

Add selectPDBrep() function to select random, representative PDB IDs

2017-10-21 21:00:18 -04:00

ABC-addSACCE_APSESproteins.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

ABC-makeMYSPElist.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

ABC-units.R

Updates

2017-09-21 17:50:16 -04:00

ABC-units.Rproj

Install files and folders

2017-08-18 22:04:01 +02:00

BIN-ALI-BLAST.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

BIN-ALI-Dotplot.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-ALI-MSA.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

BIN-ALI-Optimal_sequence_alignment.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-ALI-Similarity.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

BIN-Data_integration.R

New unit

2017-10-08 15:59:36 -04:00

BIN-FUNC-Domain_annotation.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-MYSPE.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-PHYLO-Data_preparation.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-PHYLO-Tree_analysis.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-PHYLO-Tree_building.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

BIN-PPI-Analysis.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

BIN-SEQA-Comparison.R

Changing "YFO" to "MYSPE"

2017-10-03 23:38:48 -04:00

BIN-Sequence.R

Update: chartr()

2017-10-02 14:50:33 -04:00

BIN-Storing_data.R

add ID mapping instructions

2017-10-09 17:32:07 -04:00

BLAST.R

New code for YFO list and BLAST

2017-09-21 17:49:55 -04:00

FND-Genetic_code.R

Comments on "incomplete final line" warning

2017-10-12 21:50:30 -04:00

FND-MAT-Graphs_and_networks.R

First live version

2017-10-07 11:51:08 -04:00

FND-STA-Probability_distribution.R

clarifications

2017-10-12 15:14:46 -04:00

FND-STA-Significance.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

functionTemplate.R

Install files and folders

2017-08-18 22:04:01 +02:00

README.md

Initial commit

2017-08-18 21:51:33 +02:00

RPR-Biostrings.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

RPR-eUtils_XML.R

Add code for scripting data download unit

2017-10-06 08:49:43 -04:00

RPR-FASTA.R

Code and data for RPR-FASTA

2017-10-14 18:25:46 -04:00

RPR-Genetic_code_optimality.R

New unit

2017-10-15 23:40:13 -04:00

RPR-Introduction.R

Fixed typo

2017-10-03 10:40:22 -04:00

RPR-PROSITE_POST.R

Add code for scripting data download unit

2017-10-06 08:49:43 -04:00

RPR-RegEx.R

New unit - regex practice and sample file

2017-10-02 14:51:11 -04:00

RPR-SX-PDB.R

Added and updated learning units

2017-09-12 16:09:20 -04:00

RPR-UniProt_GET.R

Add code for scripting data download unit

2017-10-06 08:49:43 -04:00

RPR-Unit_testing.R

New unit: RPR-Unit_tests, with sample test file and tests directory

2017-10-15 18:46:42 -04:00

scriptTemplate.R

Install files and folders

2017-08-18 22:04:01 +02:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units