Commit Graph

Select branches

Hide Pull Requests

develop

features/authentication

features/fixed-csv-headers

features/local-typing

main

0.1.0

0.10.0

0.11.0

0.11.1

0.12.0

0.13.0

0.13.1

0.13.2

0.14.0

0.14.1

0.14.2

0.2.0

0.3

0.4

0.5

0.5.1

0.5.2

0.6.0

0.7.0

0.7.1

0.7.2

0.8.0

0.9.0

Mono Color

• 206a105bf9 Rermoved publishing branch and tag conditions, publish errors are no longer considered failures Harrison Deng 2025-01-10 17:59:04 +00:00
• ad082b8af6 Revert "Always publish on build success" Harrison Deng 2025-01-10 17:43:14 +00:00
• 5118a25b6a publish step will now fail if twine upload fails Harrison Deng 2025-01-10 17:41:42 +00:00
• cc6a7563ca Always publish on build success Harrison Deng 2025-01-10 17:35:58 +00:00
• 484e31879e Removed test installation step from CI Harrison Deng 2025-01-10 17:28:25 +00:00
• 5449ae0c68 Moved CLI to automlst.cli repo Harrison Deng 2025-01-10 17:22:12 +00:00
• e634647774 Added untested partial matching Harrison Deng 2025-01-10 16:12:56 +00:00
• f20a656f45 Fixed multiple string typing failure handling Harrison Deng 2025-01-10 16:00:27 +00:00
• 0c0a2c9d4c Finished adding partial allele matching Harrison Deng 2025-01-10 15:25:31 +00:00
• 03fbbe542e allele profiling partial matching works Harrison Deng 2025-01-09 21:44:28 +00:00
• e60dba936c Added a tag name check for publishing Harrison Deng 2025-01-09 18:32:51 +00:00
• 9589761ddd Now tracks failed profilings Harrison Deng 2025-01-09 17:27:15 +00:00
• 2843d0d592 Added tests to test continuous MLST despite failure Harrison Deng 2025-01-09 17:04:53 +00:00
• 7bd28db6d4 Updated code coverage to only report on source code Harrison Deng 2025-01-09 16:51:08 +00:00
• 463e320386 Updated BIGSdb API to be more tolerant towards failures Harrison Deng 2025-01-09 16:49:12 +00:00
• d4f890a150 Added specific tests for BIGSdbIndex Harrison Deng 2025-01-09 16:23:42 +00:00
• 022200f197 Refactored class name Harrison Deng 2025-01-09 16:22:50 +00:00
• e66525d341 Updated README.md Harrison Deng 2025-01-09 16:08:44 +00:00
• 1d531aff42 Updated CI to only report on automlst and fixed report publishing Harrison Deng 2025-01-09 16:08:30 +00:00
• 8febfad282 Added publishing of coverage results Harrison Deng 2025-01-09 15:55:39 +00:00
• 42bcfcf61d Added coverage tracking Harrison Deng 2025-01-09 15:54:22 +00:00
• 2c412c5526 Renamed tests subdirectory to mirror source 0.1.0 Harrison Deng 2025-01-09 15:00:46 +00:00
• 59cb5230e8 Enabling setuptools_scm Harrison Deng 2025-01-09 07:54:13 +00:00
• b32a522e39 Removed python version selector in CI for test step Harrison Deng 2025-01-09 07:52:31 +00:00
• e3047d60d7 Removed version selector for python Harrison Deng 2025-01-09 07:45:19 +00:00
• b893d853a7 Changing pipeline to use pip container instead of homebrew Harrison Deng 2025-01-09 07:43:20 +00:00
• 9b8e448512 Completed updating CLI to be more organized with bettert error messages Harrison Deng 2025-01-09 07:39:18 +00:00
• 42d0f56b18 Moved to a general BIGSdb implementation Harrison Deng 2025-01-08 21:32:10 +00:00
• 645357ac58 Added unit tests for pubMLST MLST profiling Harrison Deng 2025-01-08 17:34:30 +00:00
• 424beeb559 Refactored CLI naming Harrison Deng 2025-01-08 16:55:55 +00:00
• d580402523 began adding PubMLST support Harrison Deng 2025-01-08 16:54:57 +00:00
• ad28d9bf20 Added additional test for fully automatic typing based on sequence Harrison Deng 2025-01-08 16:31:06 +00:00
• c3a492fa8f restructured MLST profiling classes Harrison Deng 2025-01-08 16:24:42 +00:00
• e93296705d Removed corresponding test Harrison Deng 2025-01-08 15:15:32 +00:00
• e9ffab5526 Removed unused code Harrison Deng 2025-01-08 15:15:21 +00:00
• 02985d5e37 Copied over most code from another of my projects Harrison Deng 2025-01-08 15:14:06 +00:00