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Harrison Deng 2025-01-09 16:08:44 +00:00
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# FASTA-MLST
# autoMLST
A CLI tool for rapidly performing MLST typing via accessing pubMLST and InstitutPasteur MSLT databases.
A CLI/library for rapidly performing MLST typing via accessing pubMLST and InstitutPasteur MSLT databases.
# Components
## automlst.cli
The command line interface, sets up very minimal and mostly makes calls to the library. Uses argparse and is split into two parts:
- `automlst info`: Provides user information on available databases to pull from, and the schemas available.
- `automlst exactmatch`: Provides users the ability to request exact match results from a given database and schema