73 Commits

Author SHA1 Message Date
7bd28db6d4 Updated code coverage to only report on source code 2025-01-09 16:51:08 +00:00
463e320386 Updated BIGSdb API to be more tolerant towards failures 2025-01-09 16:49:12 +00:00
d4f890a150 Added specific tests for BIGSdbIndex 2025-01-09 16:23:42 +00:00
022200f197 Refactored class name 2025-01-09 16:22:50 +00:00
e66525d341 Updated README.md 2025-01-09 16:08:44 +00:00
1d531aff42 Updated CI to only report on automlst and fixed report publishing 2025-01-09 16:08:30 +00:00
8febfad282 Added publishing of coverage results 2025-01-09 15:55:39 +00:00
42bcfcf61d Added coverage tracking 2025-01-09 15:54:22 +00:00
2c412c5526 Renamed tests subdirectory to mirror source 0.1.0 2025-01-09 15:00:46 +00:00
59cb5230e8 Enabling setuptools_scm 2025-01-09 07:54:13 +00:00
b32a522e39 Removed python version selector in CI for test step 2025-01-09 07:52:31 +00:00
e3047d60d7 Removed version selector for python 2025-01-09 07:45:19 +00:00
b893d853a7 Changing pipeline to use pip container instead of homebrew 2025-01-09 07:43:20 +00:00
9b8e448512 Completed updating CLI to be more organized with bettert error messages 2025-01-09 07:39:18 +00:00
42d0f56b18 Moved to a general BIGSdb implementation
Updated tests

Removed ABIF UI for the time being

Began updating CLI
2025-01-08 21:32:10 +00:00
645357ac58 Added unit tests for pubMLST MLST profiling 2025-01-08 17:34:30 +00:00
424beeb559 Refactored CLI naming 2025-01-08 16:55:55 +00:00
d580402523 began adding PubMLST support 2025-01-08 16:54:57 +00:00
ad28d9bf20 Added additional test for fully automatic typing based on sequence 2025-01-08 16:31:06 +00:00
c3a492fa8f restructured MLST profiling classes 2025-01-08 16:24:42 +00:00
e93296705d Removed corresponding test 2025-01-08 15:15:32 +00:00
e9ffab5526 Removed unused code 2025-01-08 15:15:21 +00:00
02985d5e37 Copied over most code from another of my projects 2025-01-08 15:14:06 +00:00