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660d803c9e
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Updated to not regenerate build recipe each time during CI
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2025-01-20 17:28:42 +00:00 |
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cb3aec554e
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Added git author information as environment variables
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2025-01-20 17:04:45 +00:00 |
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05e132c066
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Updated pipeline to refer to python module correctly
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2025-01-20 16:54:00 +00:00 |
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de36956cc0
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Updating kubernetes definitions to match CI server
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2025-01-20 16:26:11 +00:00 |
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fe797be34f
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Began preparing for conda deployment
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2025-01-17 21:31:38 +00:00 |
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b89f24a3fa
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Fixed issue where multiple allele identifiers were not returned in output.
0.5.1
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2025-01-17 17:04:22 +00:00 |
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e7c8c5bcf9
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Changed allele CSV output to non-lists
0.5
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2025-01-17 16:56:52 +00:00 |
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ab44dfaa48
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Publish to pypi if it has a release tag
0.4
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2025-01-17 15:13:47 +00:00 |
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611b956d88
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Elaborated on the README.md and added references to it in pyproject.toml
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2025-01-17 15:08:47 +00:00 |
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cb22dfac9b
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Merge branch 'develop'
0.3
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2025-01-17 14:34:16 +00:00 |
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7ea7ead46a
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Moved ABIF code to separate project
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2025-01-17 14:27:25 +00:00 |
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a3c864b565
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Refactored code layout
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2025-01-16 21:54:52 +00:00 |
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bad7dfc3a8
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Changing all publishing steps to use API keys
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2025-01-16 21:29:20 +00:00 |
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4fe0f0f287
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Added stage for publishing to test.pypi.org when the tag a version number.
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2025-01-16 21:22:49 +00:00 |
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3fd3ef9f20
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Updated package description
0.2.0
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2025-01-10 21:13:26 +00:00 |
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206a105bf9
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Rermoved publishing branch and tag conditions, publish errors are no longer considered failures
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2025-01-10 17:59:04 +00:00 |
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ad082b8af6
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Revert "Always publish on build success"
This reverts commit cc6a7563cafc15686e61810da6c412f27c82c1c8.
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2025-01-10 17:43:14 +00:00 |
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5118a25b6a
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publish step will now fail if twine upload fails
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2025-01-10 17:41:42 +00:00 |
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cc6a7563ca
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Always publish on build success
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2025-01-10 17:35:58 +00:00 |
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484e31879e
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Removed test installation step from CI
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2025-01-10 17:28:25 +00:00 |
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5449ae0c68
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Moved CLI to automlst.cli repo
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2025-01-10 17:22:12 +00:00 |
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e634647774
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Added untested partial matching
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2025-01-10 16:12:56 +00:00 |
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f20a656f45
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Fixed multiple string typing failure handling
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2025-01-10 16:00:27 +00:00 |
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0c0a2c9d4c
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Finished adding partial allele matching
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2025-01-10 15:25:31 +00:00 |
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03fbbe542e
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allele profiling partial matching works
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2025-01-09 21:44:28 +00:00 |
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e60dba936c
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Added a tag name check for publishing
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2025-01-09 18:32:51 +00:00 |
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9589761ddd
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Now tracks failed profilings
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2025-01-09 17:27:15 +00:00 |
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2843d0d592
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Added tests to test continuous MLST despite failure
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2025-01-09 17:04:53 +00:00 |
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7bd28db6d4
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Updated code coverage to only report on source code
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2025-01-09 16:51:08 +00:00 |
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463e320386
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Updated BIGSdb API to be more tolerant towards failures
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2025-01-09 16:49:12 +00:00 |
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d4f890a150
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Added specific tests for BIGSdbIndex
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2025-01-09 16:23:42 +00:00 |
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022200f197
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Refactored class name
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2025-01-09 16:22:50 +00:00 |
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e66525d341
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Updated README.md
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2025-01-09 16:08:44 +00:00 |
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1d531aff42
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Updated CI to only report on automlst and fixed report publishing
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2025-01-09 16:08:30 +00:00 |
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8febfad282
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Added publishing of coverage results
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2025-01-09 15:55:39 +00:00 |
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42bcfcf61d
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Added coverage tracking
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2025-01-09 15:54:22 +00:00 |
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2c412c5526
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Renamed tests subdirectory to mirror source
0.1.0
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2025-01-09 15:00:46 +00:00 |
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59cb5230e8
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Enabling setuptools_scm
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2025-01-09 07:54:13 +00:00 |
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b32a522e39
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Removed python version selector in CI for test step
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2025-01-09 07:52:31 +00:00 |
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e3047d60d7
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Removed version selector for python
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2025-01-09 07:45:19 +00:00 |
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b893d853a7
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Changing pipeline to use pip container instead of homebrew
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2025-01-09 07:43:20 +00:00 |
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9b8e448512
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Completed updating CLI to be more organized with bettert error messages
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2025-01-09 07:39:18 +00:00 |
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42d0f56b18
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Moved to a general BIGSdb implementation
Updated tests
Removed ABIF UI for the time being
Began updating CLI
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2025-01-08 21:32:10 +00:00 |
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645357ac58
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Added unit tests for pubMLST MLST profiling
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2025-01-08 17:34:30 +00:00 |
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424beeb559
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Refactored CLI naming
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2025-01-08 16:55:55 +00:00 |
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d580402523
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began adding PubMLST support
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2025-01-08 16:54:57 +00:00 |
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ad28d9bf20
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Added additional test for fully automatic typing based on sequence
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2025-01-08 16:31:06 +00:00 |
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c3a492fa8f
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restructured MLST profiling classes
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2025-01-08 16:24:42 +00:00 |
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e93296705d
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Removed corresponding test
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2025-01-08 15:15:32 +00:00 |
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e9ffab5526
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Removed unused code
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2025-01-08 15:15:21 +00:00 |
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