bfc286e6b0
Updated test cases to reflect changes in codebase
...
MLSTProfile will always return a value, even if there were no exact matches.
Removed a test case specifically testing for stopping on failure, which is a removed feature.
2025-02-12 14:57:51 +00:00
c18d817cd9
Added test to verify that CSV target columns are ordered
2025-02-12 14:38:12 +00:00
3e3898334f
Began implementing LazyPersistentCachedBIGSdbMLSTProfiler
2025-01-27 22:03:49 +00:00
1773bb9dcb
Updated naming (again).
2025-01-22 21:05:19 +00:00
53e74af20a
Refactoring project name to autoBIGSst.engine
2025-01-22 18:24:04 +00:00
b89f24a3fa
Fixed issue where multiple allele identifiers were not returned in output.
2025-01-17 17:04:22 +00:00
e7c8c5bcf9
Changed allele CSV output to non-lists
2025-01-17 16:56:52 +00:00
7ea7ead46a
Moved ABIF code to separate project
2025-01-17 14:27:25 +00:00
a3c864b565
Refactored code layout
2025-01-16 21:54:52 +00:00
f20a656f45
Fixed multiple string typing failure handling
2025-01-10 16:00:27 +00:00
0c0a2c9d4c
Finished adding partial allele matching
2025-01-10 15:25:31 +00:00
03fbbe542e
allele profiling partial matching works
2025-01-09 21:44:28 +00:00
9589761ddd
Now tracks failed profilings
2025-01-09 17:27:15 +00:00
2843d0d592
Added tests to test continuous MLST despite failure
2025-01-09 17:04:53 +00:00
d4f890a150
Added specific tests for BIGSdbIndex
2025-01-09 16:23:42 +00:00
2c412c5526
Renamed tests subdirectory to mirror source
2025-01-09 15:00:46 +00:00
42d0f56b18
Moved to a general BIGSdb implementation
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Updated tests
Removed ABIF UI for the time being
Began updating CLI
2025-01-08 21:32:10 +00:00
645357ac58
Added unit tests for pubMLST MLST profiling
2025-01-08 17:34:30 +00:00
d580402523
began adding PubMLST support
2025-01-08 16:54:57 +00:00
ad28d9bf20
Added additional test for fully automatic typing based on sequence
2025-01-08 16:31:06 +00:00
c3a492fa8f
restructured MLST profiling classes
2025-01-08 16:24:42 +00:00
e93296705d
Removed corresponding test
2025-01-08 15:15:32 +00:00
02985d5e37
Copied over most code from another of my projects
2025-01-08 15:14:06 +00:00
