diff --git a/tests/nsbdiagnosistoolkit/engine/test_annotate.py b/tests/nsbdiagnosistoolkit/engine/test_annotate.py deleted file mode 100644 index 0989f3d..0000000 --- a/tests/nsbdiagnosistoolkit/engine/test_annotate.py +++ /dev/null @@ -1,12 +0,0 @@ -from automlst.engine.annotate import annotate_from_genbank, fetch_ncbi_genbank -from Bio import SeqIO - -from automlst.engine.data.genomics import AnnotatedString - -async def test_annotate_from_genbank_for_adk_annotation(): - sequence = str(SeqIO.read("tests/resources/tohama_I_bpertussis.fasta", "fasta").seq) - annotated_sequence = await annotate_from_genbank("CP011448.1", "bpertussis_tohamaI", sequence, max_annotation_length=750, gene_targets=set(["adk"])) - assert isinstance(annotated_sequence, AnnotatedString) - assert len(annotated_sequence.annotations) >= 1 - assert annotated_sequence.annotations[0].type == "gene" - assert "adk" in annotated_sequence.annotations[0].feature_properties["gene"]