Harrison Deng
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14 lines
640 B
Markdown
14 lines
640 B
Markdown
# NSBDiagnosis Toolkit
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A software suite automating the diagnostic steps from Sanger Trace Files (ABIFs) and FASTAs. Namely, this tool is (or will be) capable of:
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- [ ] Improved consensus conflict resolution via a peak strength metric
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- [ ] Automatic reporting on variations from a reference file
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- [x] Automatic annotating based off pre-existing GenBank data from NCBI
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- [x] Automatic pulling GenBank Data
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- [x] Automatic querying of Institut Pasteur's MLST databases
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- [x] Automatic export of spreadsheet file in the form of a CSV
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- [x] User friendly, and automatable (Galaxy compatible) command-line interface
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- [ ] Interactive Web UI
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