NSBDiagnosis Toolkit

A software suite automating the diagnostic steps from Sanger Trace Files (ABIFs) and FASTAs. Namely, this tool is (or will be) capable of:

• Improved consensus conflict resolution via a peak strength metric
• Automatic reporting on variations from a reference file
• Automatic annotating based off pre-existing GenBank data from NCBI
• Automatic pulling GenBank Data
• Automatic querying of Institut Pasteur's MLST databases
• Automatic export of spreadsheet file in the form of a CSV
• User friendly, and automatable (Galaxy compatible) command-line interface
• Interactive Web UI