Updated CI config to mirror serverside config
Some checks failed
filterfasta/pipeline/head There was a failure building this commit

This commit is contained in:
Harrison Deng 2024-11-14 21:06:14 +00:00
parent 1b08cee027
commit bf357a5524
3 changed files with 28 additions and 2 deletions

View File

@ -0,0 +1,22 @@
// For format details, see https://aka.ms/devcontainer.json. For config options, see the
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
"name": "Python 3",
// Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
"image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye"
// Features to add to the dev container. More info: https://containers.dev/features.
// "features": {},
// Use 'forwardPorts' to make a list of ports inside the container available locally.
// "forwardPorts": [],
// Use 'postCreateCommand' to run commands after the container is created.
// "postCreateCommand": "pip3 install --user -r requirements.txt",
// Configure tool-specific properties.
// "customizations": {},
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
// "remoteUser": "root"
}

4
Jenkinsfile vendored
View File

@ -8,7 +8,7 @@ pipeline {
}
stage("install") {
steps {
sh 'mamba env update --file environment.yml --prefix ./env || mamba env create --force --file environment.yml --prefix ./env'
sh 'pip install -r requirements.txt'
}
}
stage("build") {
@ -32,7 +32,7 @@ pipeline {
branch '**/master'
}
steps {
withCredentials([usernamePassword(credentialsId: 'rs-git-package-registry-ydeng', passwordVariable: 'PASS', usernameVariable: 'USER')]) {
withCredentials([usernamePassword(credentialsId: '4d6f64be-d26d-4f95-8de3-b6a9b0beb311', passwordVariable: 'PASS', usernameVariable: 'USER')]) {
sh "python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*"
}
}

View File

@ -1 +1,5 @@
Bio==1.5.6
build
pytest
twine
biopython==1.81