diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..8c6f3fb --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,22 @@ +// For format details, see https://aka.ms/devcontainer.json. For config options, see the +// README at: https://github.com/devcontainers/templates/tree/main/src/python +{ + "name": "Python 3", + // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile + "image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye" + + // Features to add to the dev container. More info: https://containers.dev/features. + // "features": {}, + + // Use 'forwardPorts' to make a list of ports inside the container available locally. + // "forwardPorts": [], + + // Use 'postCreateCommand' to run commands after the container is created. + // "postCreateCommand": "pip3 install --user -r requirements.txt", + + // Configure tool-specific properties. + // "customizations": {}, + + // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root. + // "remoteUser": "root" +} diff --git a/Jenkinsfile b/Jenkinsfile index c9e2633..803ed30 100644 --- a/Jenkinsfile +++ b/Jenkinsfile @@ -8,7 +8,7 @@ pipeline { } stage("install") { steps { - sh 'mamba env update --file environment.yml --prefix ./env || mamba env create --force --file environment.yml --prefix ./env' + sh 'pip install -r requirements.txt' } } stage("build") { @@ -32,7 +32,7 @@ pipeline { branch '**/master' } steps { - withCredentials([usernamePassword(credentialsId: 'rs-git-package-registry-ydeng', passwordVariable: 'PASS', usernameVariable: 'USER')]) { + withCredentials([usernamePassword(credentialsId: '4d6f64be-d26d-4f95-8de3-b6a9b0beb311', passwordVariable: 'PASS', usernameVariable: 'USER')]) { sh "python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*" } } diff --git a/requirements.txt b/requirements.txt index 808664b..11067ab 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1 +1,5 @@ Bio==1.5.6 +build +pytest +twine +biopython==1.81 \ No newline at end of file