bmlsa/README.md

BMLSA

A Basic multi local sequence alignment tool using the Biopython implementation of the Smith-Waterman alignment algorithm.

Features

• Aligns a CSV of short sequences locally to a given reference sequence
• Outputs in a CSV with old and new positions
• Selectable parameters for alignment
• Compatible with broad-range of input CSV formats
• Automatically align with all sequences in reference FASTA
• All produced output is human readable!