hyginn
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33ba40a252
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Bugfix in AddProtein - paste() returns deparsed expression for single-column lists...
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2020-11-09 22:02:27 +10:00 |
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hyginn
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55a0d18a66
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patch a problem where jsonlite:: oversimplifies from single entries to array, rather than list.
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2020-10-13 22:38:47 +10:00 |
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hyginn
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5524832a75
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bugfix: wrong iterator
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2020-10-13 21:45:14 +10:00 |
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hyginn
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a50688e0d0
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bugfix: jsonlite::fromJSON() chokes on a blank
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2020-10-13 20:35:45 +10:00 |
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hyginn
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804e3a73b7
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bugfix: import all taxonomy IDs as integer
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2020-10-13 20:33:04 +10:00 |
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hyginn
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0541612e0b
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Bugfixes
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2020-10-13 20:27:56 +10:00 |
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hyginn
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4d071cf8d5
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Add code and utility functions for database export of protein annotations to JSON - towards sharing annotations on the Student Wiki Public page
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2020-10-13 16:08:35 +10:00 |
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hyginn
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169ca58b92
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Bugfix: q -> Q
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2020-09-25 21:51:04 +10:00 |
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hyginn
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abb146f828
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bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
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2020-09-25 11:29:28 +10:00 |
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hyginn
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36140bc984
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updates; vectorized dbFetchUniProtSeq()
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2020-09-25 10:47:41 +10:00 |
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hyginn
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2775c7c9a8
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Updates to UniProtIDmap, and address httr/curl initialization bug
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2020-09-25 02:27:42 +10:00 |
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hyginn
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76b18a8a35
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Update PPI-Analysis assets and code
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2020-09-23 20:47:26 +10:00 |
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hyginn
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cf90c52a61
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Update the ScCC network data
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2020-09-23 14:06:58 +10:00 |
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hyginn
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f90f581963
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ToDo ...
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2020-09-22 21:02:27 +10:00 |
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hyginn
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7536473c5d
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Updated MYSPE data and entire workflow. Changed all .RData to .rds
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2020-09-21 14:28:24 +10:00 |
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hyginn
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37ef655d47
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2020 updates - deactivate for maintenance
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2020-09-18 21:56:30 +10:00 |
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hyginn
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84aa2dca0b
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prefix function with package name
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2019-11-14 22:12:33 -05:00 |
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hyginn
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cffd803c23
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Use requireNamespace(), <package>::<function>() idiom,
Biocmanager:: - not biocLite()
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2019-01-08 17:11:25 +10:00 |
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hyginn
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2ab162e375
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Maintance: typos, update of prosite URL
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2018-12-02 18:52:36 +10:00 |
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hyginn
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1dd87e7473
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Maintainance fixes and UniProt API change bugfix
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2018-10-30 21:27:42 -04:00 |
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hyginn
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82841de74a
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Change blockWidth > 60 from error to warning
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2017-11-20 19:00:55 -05:00 |
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hyginn
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a58e35f060
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Fixed parsing and added missing logic
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2017-11-16 11:47:53 -05:00 |
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hyginn
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0da30ec109
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bugfix
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2017-11-01 23:29:30 -04:00 |
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hyginn
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553b042f20
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MSA unit, and supporting files
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2017-10-28 23:09:21 -04:00 |
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hyginn
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044990d1c9
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coding style:
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2017-10-28 23:08:31 -04:00 |
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hyginn
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e57db9e9a0
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Added data files for PSI-BLAST unit, updated some other JSONs
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2017-10-23 21:00:39 -04:00 |
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hyginn
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bc4afc97aa
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Updates for BIN-ALI-BLAST
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2017-10-23 12:37:09 -04:00 |
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hyginn
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153e7dcf00
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Update: FASTA files may contain gap and stop characters
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2017-10-14 18:26:16 -04:00 |
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hyginn
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32a45fc059
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Add UniProtIDmap() function
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2017-10-08 15:59:56 -04:00 |
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hyginn
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7ed5309901
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Supporting script to create a cell cycle subset from STRING data. Used for FND-MAT-Graphs_and_networks deliverables
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2017-10-07 11:52:33 -04:00 |
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hyginn
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27dd73664b
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add httr and xml2 package, add scripted data download functions
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2017-10-06 08:51:12 -04:00 |
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hyginn
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e1dbd1d268
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update function to remove FASTA headers (line-break terminated substrings that begin with a ">")
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2017-09-29 12:25:00 -04:00 |
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hyginn
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95accd9608
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new scripts
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2017-09-25 01:31:40 -04:00 |
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