diff --git a/data/MBP1_SACCE.json b/data/MBP1_SACCE.json
new file mode 100644
index 0000000..56e91a3
--- /dev/null
+++ b/data/MBP1_SACCE.json
@@ -0,0 +1,20 @@
+[
+  { "name" : "MBP1_SACCE",
+    "RefSeqID" : "NP_010227",
+    "UniProtID" : "P39678",
+    "taxonomyID" : 559292,
+    "sequence" : [
+       "MSNQIYSARYSGVDVYEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGF",
+       "GKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDGSASPPPAPKHHHASKVDRKKAIRSASTSAIMET",
+       "KRNNKKAEENQFQSSKILGNPTAAPRKRGRPVGSTRGSRRKLGVNLQRSQSDMGFPRPAIPNSSISTTQL",
+       "PSIRSTMGPQSPTLGILEEERHDSRQQQPQQNNSAQFKEIDLEDGLSSDVEPSQQLQQVFNQNTGFVPQQ",
+       "QSSLIQTQQTESMATSVSSSPSLPTSPGDFADSNPFEERFPGGGTSPIISMIPRYPVTSRPQTSDINDKV",
+       "NKYLSKLVDYFISNEMKSNKSLPQVLLHPPPHSAPYIDAPIDPELHTAFHWACSMGNLPIAEALYEAGTS",
+       "IRSTNSQGQTPLMRSSLFHNSYTRRTFPRIFQLLHETVFDIDSQSQTVIHHIVKRKSTTPSAVYYLDVVL",
+       "SKIKDFSPQYRIELLLNTQDKNGDTALHIASKNGDVVFFNTLVKMGALTTISNKEGLTANEIMNQQYEQM",
+       "MIQNGTNQHVNSSNTDLNIHVNTNNIETKNDVNSMVIMSPVSPSDYITYPSQIATNISRNIPNVVNSMKQ",
+       "MASIYNDLHEQHDNEIKSLQKTLKSISKTKIQVSLKTLEVLKESSKDENGEAQTNDDFEILSRLQEQNTK",
+       "KLRKRLIRYKRLIKQKLEYRQTVLLNKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNKLSS",
+       "LVKKFEDNAKIHKYRRIIREGTEMNIEEVDSSLDVILQTLIANNNKNKGAEQIITISNANSHA"]
+  }
+]
diff --git a/data/refAnnotations.json b/data/refAnnotations.json
new file mode 100644
index 0000000..66d6ab3
--- /dev/null
+++ b/data/refAnnotations.json
@@ -0,0 +1,115 @@
+[
+  {"pName" : "MBP1_SACCE", "fName" : "APSES fold", "start" : "4", "end" : "102"},
+  {"pName" : "MBP1_SACCE", "fName" : "KilA-N", "start" : "22", "end" : "105"},
+  {"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "108", "end" : "122"},
+  {"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "236", "end" : "241"},
+  {"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "279", "end" : "307"},
+  {"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "700", "end" : "717"},
+  {"pName" : "MBP1_SACCE", "fName" : "low complexity", "start" : "700", "end" : "717"},
+  {"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "394", "end" : "423"},
+  {"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "427", "end" : "463"},
+  {"pName" : "MBP1_SACCE", "fName" : "Ankyrin fold", "start" : "512", "end" : "541"},
+  {"pName" : "MBP1_SACCE", "fName" : "Swi6 fold", "start" : "381", "end" : "547"},
+  {"pName" : "MBP1_SACCE", "fName" : "coiled coil", "start" : "633", "end" : "655"},
+
+  {"pName" : "MBP1_ASPNI", "fName" : "APSES fold", "start" : "9", "end" : "106"},
+  {"pName" : "MBP1_ASPNI", "fName" : "KilA-N", "start" : "26", "end" : "109"},
+  {"pName" : "MBP1_ASPNI", "fName" : "low complexity", "start" : "529", "end" : "534"},
+  {"pName" : "MBP1_ASPNI", "fName" : "Ankyrin fold", "start" : "260", "end" : "289"},
+  {"pName" : "MBP1_ASPNI", "fName" : "Ankyrin fold", "start" : "381", "end" : "413"},
+  {"pName" : "MBP1_ASPNI", "fName" : "Swi6 fold", "start" : "193", "end" : "402"},
+  {"pName" : "MBP1_ASPNI", "fName" : "coiled coil", "start" : "509", "end" : "572"},
+
+  {"pName" : "MBP1_BIPOR", "fName" : "APSES fold", "start" : "8", "end" : "106"},
+  {"pName" : "MBP1_BIPOR", "fName" : "KilA-N", "start" : "26", "end" : "109"},
+  {"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "134", "end" : "152"},
+  {"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "267", "end" : "278"},
+  {"pName" : "MBP1_BIPOR", "fName" : "low complexity", "start" : "670", "end" : "685"},
+  {"pName" : "MBP1_BIPOR", "fName" : "Ankyrin fold", "start" : "266", "end" : "295"},
+  {"pName" : "MBP1_BIPOR", "fName" : "Ankyrin fold", "start" : "387", "end" : "416"},
+  {"pName" : "MBP1_BIPOR", "fName" : "Swi6 fold", "start" : "253", "end" : "421"},
+  {"pName" : "MBP1_BIPOR", "fName" : "coiled coil", "start" : "659", "end" : "681"},
+  {"pName" : "MBP1_BIPOR", "fName" : "coiled coil", "start" : "500", "end" : "590"},
+
+  {"pName" : "MBP1_NEUCR", "fName" : "APSES fold", "start" : "14", "end" : "114"},
+  {"pName" : "MBP1_NEUCR", "fName" : "KilA-N", "start" : "34", "end" : "117"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "130", "end" : "141"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "253", "end" : "266"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "514", "end" : "525"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "554", "end" : "564"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "601", "end" : "618"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "620", "end" : "629"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "636", "end" : "652"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "658", "end" : "672"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "725", "end" : "735"},
+  {"pName" : "MBP1_NEUCR", "fName" : "low complexity", "start" : "752", "end" : "771"},
+  {"pName" : "MBP1_NEUCR", "fName" : "Ankyrin fold", "start" : "268", "end" : "297"},
+  {"pName" : "MBP1_NEUCR", "fName" : "Ankyrin fold", "start" : "390", "end" : "419"},
+  {"pName" : "MBP1_NEUCR", "fName" : "Swi6 fold", "start" : "270", "end" : "426"},
+  {"pName" : "MBP1_NEUCR", "fName" : "coiled coil", "start" : "500", "end" : "550"},
+
+  {"pName" : "MBP1_SCHPO", "fName" : "APSES fold", "start" : "8", "end" : "104"},
+  {"pName" : "MBP1_SCHPO", "fName" : "KilA-N", "start" : "25", "end" : "113"},
+  {"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "111", "end" : "125"},
+  {"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "136", "end" : "145"},
+  {"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "176", "end" : "191"},
+  {"pName" : "MBP1_SCHPO", "fName" : "low complexity", "start" : "422", "end" : "447"},
+  {"pName" : "MBP1_SCHPO", "fName" : "Ankyrin fold", "start" : "247", "end" : "276"},
+  {"pName" : "MBP1_SCHPO", "fName" : "Ankyrin fold", "start" : "368", "end" : "397"},
+  {"pName" : "MBP1_SCHPO", "fName" : "Swi6 fold", "start" : "234", "end" : "400"},
+  {"pName" : "MBP1_SCHPO", "fName" : "coiled coil", "start" : "457", "end" : "538"},
+
+  {"pName" : "MBP1_COPCI", "fName" : "APSES fold", "start" : "5", "end" : "103"},
+  {"pName" : "MBP1_COPCI", "fName" : "KilA-N", "start" : "23", "end" : "106"},
+  {"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "170", "end" : "191"},
+  {"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "435", "end" : "450"},
+  {"pName" : "MBP1_COPCI", "fName" : "low complexity", "start" : "611", "end" : "626"},
+  {"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "270", "end" : "299"},
+  {"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "389", "end" : "418"},
+  {"pName" : "MBP1_COPCI", "fName" : "Ankyrin fold", "start" : "474", "end" : "509"},
+  {"pName" : "MBP1_COPCI", "fName" : "Swi6 fold", "start" : "257", "end" : "429"},
+  {"pName" : "MBP1_COPCI", "fName" : "coiled coil", "start" : "500", "end" : "570"},
+  {"pName" : "MBP1_COPCI", "fName" : "coiled coil", "start" : "651", "end" : "678"},
+
+  {"pName" : "MBP1_CRYNE", "fName" : "APSES fold", "start" : "113", "end" : "211"},
+  {"pName" : "MBP1_CRYNE", "fName" : "KilA-N", "start" : "131", "end" : "215"},
+  {"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "66", "end" : "85"},
+  {"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "413", "end" : "423"},
+  {"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "633", "end" : "644"},
+  {"pName" : "MBP1_CRYNE", "fName" : "low complexity", "start" : "697", "end" : "709"},
+  {"pName" : "MBP1_CRYNE", "fName" : "Ankyrin fold", "start" : "477", "end" : "506"},
+  {"pName" : "MBP1_CRYNE", "fName" : "Ankyrin fold", "start" : "618", "end" : "647"},
+  {"pName" : "MBP1_CRYNE", "fName" : "Swi6 fold", "start" : "452", "end" : "663"},
+
+  {"pName" : "MBP1_PUCGR", "fName" : "APSES fold", "start" : "90", "end" : "187"},
+  {"pName" : "MBP1_PUCGR", "fName" : "KilA-N", "start" : "107", "end" : "190"},
+  {"pName" : "MBP1_PUCGR", "fName" : "low complexity", "start" : "208", "end" : "227"},
+  {"pName" : "MBP1_PUCGR", "fName" : "low complexity", "start" : "273", "end" : "291"},
+  {"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "442", "end" : "271"},
+  {"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "475", "end" : "509"},
+  {"pName" : "MBP1_PUCGR", "fName" : "Ankyrin fold", "start" : "561", "end" : "590"},
+  {"pName" : "MBP1_PUCGR", "fName" : "Swi6 fold", "start" : "429", "end" : "601"},
+  {"pName" : "MBP1_PUCGR", "fName" : "coiled coil", "start" : "827", "end" : "863"},
+
+  {"pName" : "MBP1_USTMA", "fName" : "APSES fold", "start" : "7", "end" : "104"},
+  {"pName" : "MBP1_USTMA", "fName" : "KilA-N", "start" : "24", "end" : "107"},
+  {"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "106", "end" : "116"},
+  {"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "161", "end" : "183"},
+  {"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "657", "end" : "672"},
+  {"pName" : "MBP1_USTMA", "fName" : "low complexity", "start" : "776", "end" : "796"},
+  {"pName" : "MBP1_USTMA", "fName" : "Ankyrin fold", "start" : "245", "end" : "274"},
+  {"pName" : "MBP1_USTMA", "fName" : "Ankyrin fold", "start" : "355", "end" : "384"},
+  {"pName" : "MBP1_USTMA", "fName" : "Swi6 fold", "start" : "232", "end" : "395"},
+  {"pName" : "MBP1_USTMA", "fName" : "coiled coil", "start" : "581", "end" : "609"},
+
+  {"pName" : "MBP1_WALME", "fName" : "APSES fold", "start" : "6", "end" : "103"},
+  {"pName" : "MBP1_WALME", "fName" : "KilA-N", "start" : "23", "end" : "106"},
+  {"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "149", "end" : "162"},
+  {"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "171", "end" : "188"},
+  {"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "618", "end" : "628"},
+  {"pName" : "MBP1_WALME", "fName" : "low complexity", "start" : "634", "end" : "660"},
+  {"pName" : "MBP1_WALME", "fName" : "Ankyrin fold", "start" : "250", "end" : "279"},
+  {"pName" : "MBP1_WALME", "fName" : "Ankyrin fold", "start" : "369", "end" : "398"},
+  {"pName" : "MBP1_WALME", "fName" : "Swi6 fold", "start" : "237", "end" : "409"},
+  {"pName" : "MBP1_WALME", "fName" : "coiled coil", "start" : "461", "end" : "585"}
+]
diff --git a/data/refFeatures.json b/data/refFeatures.json
new file mode 100644
index 0000000..8df1da7
--- /dev/null
+++ b/data/refFeatures.json
@@ -0,0 +1,47 @@
+[
+  { "name" : "APSES fold",
+    "description " : "DNA binding domain by similarity to structure",
+    "sourceDB" : "PDB",
+    "accession" : "1BM8_A_1_99"},
+
+  { "name" : "KilA-N",
+    "description " : "DNA binding domain by Pfam annotation",
+    "sourceDB" : "Pfam",
+    "accession" : "PF04383"},
+
+  { "name" : "AT hook",
+    "description " : "DNA interaction motif by SMART annotation",
+    "sourceDB" : "SMART",
+    "accession" : null},
+
+  { "name" : "low complexity",
+    "description " : "SEG annotation by SMART",
+    "sourceDB" : "SMART",
+    "accession" : null},
+
+  { "name" : "Ankyrin fold",
+    "description " : "Ankyrin domain by SMART annotation",
+    "sourceDB" : "SMART",
+    "accession" : "SM00248"},
+
+  { "name" : "Swi6 fold",
+    "description " : "Swi6 fold by similarity to structure",
+    "sourceDB" : "PDB",
+    "accession" : "1SW6_B"},
+
+  { "name" : "coiled coil",
+    "description " : "Coiled coil by SMART annotation",
+    "sourceDB" : "SMART",
+    "accession" : null},
+
+  { "name" : "McInerny 2011",
+    "description " : "Yeast cell cycle review",
+    "sourceDB" : "PubMed",
+    "accession" : "21310294"}
+]
+
+
+
+
+
+
diff --git a/data/refProteins.json b/data/refProteins.json
new file mode 100644
index 0000000..43832d2
--- /dev/null
+++ b/data/refProteins.json
@@ -0,0 +1,155 @@
+[
+  { "name" : "MBP1_SCHPO",
+    "RefSeqID" : "NP_593032",
+    "UniProtID" : "P41412",
+    "taxonomyID" : 284812,
+    "sequence" : [
+       "MAPRSSAVHVAVYSGVEVYECFIKGVSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQ",
+       "GGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEGKAIAPKKKQTKQKKPSVRGRRGRKPSSLSS",
+       "STLHSVNEKQPNSSISPTIESSMNKVNLPGAEEQVSATPLPASPNALLSPNDNTIKPVEELGMLEAPLDK",
+       "YEESLLDFFLHPEEGRIPSFLYSPPPDFQVNSVIDDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRL",
+       "SQTPLMRSVIFTNNYDCQTFGQVLELLQSTIYAVDTNGQSIFHHIVQSTSTPSKVAAAKYYLDCILEKLI",
+       "SIQPFENVVRLVNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHSLL",
+       "QSNSNASHSAFSFSGISPAIISPSCSSHAFVKAIPSISSKFSQLAEEYESQLREKEEDLIRANRLKQDTL",
+       "NEISRTYQELTFLQKNNPTYSQSMENLIREAQETYQQLSKRLLIWLEARQIFDLERSLKPHTSLSISFPS",
+       "DFLKKEDGLSLNNDFKKPACNNVTNSDEYEQLINKLTSLQASRKKDTLYIRKLYEELGIDDTVNSYRRLI",
+       "AMSCGINPEDLSLEILDAVEEALTREK"]
+  },
+  { "name" : "MBP1_ASPNI",
+    "RefSeqID" : "XP_660758",
+    "UniProtID" : "Q5B8H6",
+    "taxonomyID" : 227321,
+    "sequence" : [
+       "MAAVDFSNVYSATYSSVPVYEFKIGTDSVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKV",
+       "QGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVAGDRSPPPAPKHTSAASKPRAPKINKRVVKEDV",
+       "FSAVNHHRSMGPPSFHHEHYDVNTGLDEDESIEQATLESSSMIADEDMISMSQNGPYSSRKRKRGINEVA",
+       "AMSLSEQEHILYGDQLLDYFMTVGDAPEATRIPPPQPPANFQVDRPIDDSGNTALHWACAMGDLEIVKDL",
+       "LRRGADMKALSIHEETPLVRAVLFTNNYEKRTFPALLDLLLDTISFRDWFGATLFHHIAQTTKSKGKWKS",
+       "SRYYCEVALEKLRTTFSPEEVDLLLSCQDSVGDTAVLVAARNGVFRLVDLLLSRCPRAGDLVNKRGETAS",
+       "SIMQRAHLAERDIPPPPSSITMGNDHIDGEVGAPTSLEPQSVTLHHESSPATAQLLSQIGAIMAEASRKL",
+       "TSSYGAAKPSQKDSDDVANPEALYEQLEQDRQKIRRQYDALAAKEAAEESSDAQLGRYEQMRDNYESLLE",
+       "QIQRARLKERLASTPVPTQTAVIGSSSPEQDRLLTTFQLSRALCSEQKIRRAAVKELAQQRADAGVSTKF",
+       "DVHRKLVALATGLKEEELDPMAAELAETLEFDRMNGKGVGPESPEADHKDSASLPFPGPVVSVDA"]
+  },
+  { "name" : "MBP1_BIPOR",
+    "RefSeqID" : "XP_007682304",
+    "UniProtID" : "W6ZM86",
+    "taxonomyID" : 930090,
+    "sequence" : [
+       "MPPAPDGKIYSATYSNVPVYECNVNGHHVMRRRADDWINATHILKVADYDKPARTRILEREVQKGVHEKV",
+       "QGGYGKYQGTWIPLEEGRGLAERNGVLDKMRAIFDYVPGDRSPPPAPKHATAASNRMKPPRQTAAAVAAA",
+       "AVAAAAAAAAVANHNALMSNSRSQASEDPYENSQRSQIYREDTPDNETVISESMLGDADLMDMSQYSADG",
+       "NRKRKRGMDQMSLLDQQHQIWADQLLDYFMLLDHEAAVSWPEPPPSINLDRPIDEKGHAAMHWAAAMGDV",
+       "GVVKELIHRGARLDCLSNNLETPLMRAVMFTNNFDKETMPSMVKIFQQTVHRTDWFGSTVFHHIAATTSS",
+       "SNKYVCARWYLDCIINKLSETWIPEEVTRLLNAADQNGDTAIMIAARNGARKCVRSLLGRNVAVDIPNKK",
+       "GETADDLIRELNQRRRMHGRTRQASSSPFAPAPEHRLNGHVPHFDGGPLMSVPVPSMAVRESVQYRSQTA",
+       "SHLMTKVAPTLLEKCEELATAYEAELQEKEAEFFDAERVVKRRQAELEAVRKQVAELQSMSKGLHIDLND",
+       "EEAERQQEDELRLLVEEAESLLEIEQKAELRRLCSSMPQQNSDSSPVDITEKMRLALLLHRAQLERRELV",
+       "REVVGNLSVAGMSEKQGTYKKLIAKALGEREEDVESMLPEILQELEEAETQERAEGLDGSPV"]
+  },
+  { "name" : "MBP1_NEUCR",
+    "RefSeqID" : "XP_955821",
+    "UniProtID" : "Q7RW59",
+    "taxonomyID" : 367110,
+    "sequence" : [
+       "MVKENVGGNPEPGIYSATYSGIPVWEYQFGVDLKEHVMRRRHDDWVNATHILKAAGFDKPARTRILEREV",
+       "QKDTHEKIQGGYGRYQGTWIPLEQAEALARRNNIYERLKPIFEFQPGNESPPPAPRHASKPKAPKVKPAV",
+       "PTWGSKSAKNANPPQPGTFLPPGRKGLPAQAPDYNDADTHMHDDDTPDNLTVASASYMAEDDRYDHSHFS",
+       "TGHRKRKRDELIEDMTEQQHAVYGDELLDYFLLSRNEQPAVRPDPPPNFKPDWPIDNERHTCLHWASAMG",
+       "DVDVMRQLKKFGASLDAQNVRGETPFMRAVNFTNCFEKQTFPQVMKELFSTIDCRDLSGCTVIHHAAVMK",
+       "IGRVNSQSCSRYYLDIILNRLQETHHPEFVQQLLDAQDNDGNTAVHLAAMRDARKCIRALLGRGASTDIP",
+       "NKQGIRAEELIKELNASISKSRSNLPQRSSSPFAPDTQRHDAFHEAISESMVTSRKNSQPNYSSDAANTV",
+       "QNRITPLVLQKLKDLTATYDSEFKEKDDAEKEARRILNKTQSELKALTASIDDYNSRLDTDDVAAKTAAE",
+       "MATARHKVLAFVTHQNRISVQEAVKQELAALDRANAVTNGTSTKSKSSSPSKKPKLSPIPDQKDKPPKDE",
+       "NETESEAEHPDPPAAQAHQQQPGPSSQDTEVEDQDREEEEDDYTHRLSLAAELRSILQEQRSAENDYVEA",
+       "RGMLGTGERIDKYKHLLMSCLPPDEQENLEENLEEMIKLMEQEDESVTDLPAGAVGGGGGGNAADGSGGG",
+       "GQPSNGRRESVLPALRGGNGDGEMSRRGSRTAAAAAAQVDGEREINGRAGAERTERIQEIAAV"]
+  },
+  { "name" : "MBP1_COPCI",
+    "RefSeqID" : "XP_001837394",
+    "UniProtID" : "A8NYC6",
+    "taxonomyID" : 240176,
+    "sequence" : [
+       "MPEAQIFKATYSGIPVYEMMCKGVAVMRRRSDSWLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGG",
+       "YGKYQGTWIPLERGMQLAKQYNCEHLLRPIIEFTPAAKSPPLAPKHLVATAGNRPVRKPLTTDLSAAVIN",
+       "TRSTRKQVADGVGEESDHDTHSLRGSEDGSMTPSPSEASSSSRTPSPIHSPGTYHSNGLDGPSSGGRNRY",
+       "RQSNDRYDEDDDASRHNGMGDPRSYGDQILEYFISDTNQIPPILITPPPDFDPNMAIDDDGHTSLHWACA",
+       "MGRIRIVKLLLSAGADIFKVNKAGQTALMRSVMFANNYDVRKFPELYELLHRSTLNIDNSNRTVFHHVVD",
+       "VAMSKGKTHAARYYMETILTRLADYPKELADVINFQDEDGETALTMAARCRSKRLVKLLIDHGADPKINN",
+       "HDGKNAEDYILEDERFRSSPAPSSRVAAMSYRNAQVAYPPPGAPSTYSFAPANHDRPPLHYSAAAQKAST",
+       "RCVNDMASMLDSLAASFDQELRDKERDMAQAQALLTNIQAEILESQRTVLQLRQQAEGLSQAKQRLADLE",
+       "NALQDKMGRRYRLGFEKWIKDEETREKVIRDAANGDLVLTPATTSYTVDEDGDSDSGSNGDKNKGKRKAQ",
+       "VQQEEVSDLVELYSNIPTDPEELRKQCEALREEVSQSRKRRKAMFDELVTFQAEAGTSGRMSDYRRLIAA",
+       "GCGGLEPLEIDSVLGMLLETLEAEDPSSTSATWSGSKGQQTG"]
+  },
+  { "name" : "MBP1_CRYNE",
+    "RefSeqID" : "XP_569090",
+    "UniProtID" : "Q5KMQ9",
+    "taxonomyID" : 214684,
+    "sequence" : [
+       "MGKKVIASGGDNGPNTIYKATYSGVPVYEMVCRDVAVMRRRSDAYLNATQILKVAGFDKPQRTRVLEREV",
+       "QKGEHEKVQGGYGKYQGTWIPIERGLALAKQYGVEDILRPIIDYVPTSVSPPPAPKHSVAPPSKARRDKE",
+       "KETGRTKATPSRTGPTSAAALQAQAQLNRAKMHDSTPDADASFRSFEERVSLTPEDDSSSDTPSPVASVM",
+       "TDQDMEVDKMGMHMSMPNVTLSQNMEELGAGSRKRSAAMMMEDEDQFGQLRSIRGNSAVHTPHGTPRHLG",
+       "IGMPPEPIGPEQYTDIILNYFVSETSQIPSILVSPPHDFDPNAPIDDDGHTALHWACAMGRVRVVKLLLT",
+       "AGASIFAGNNAEQTPLMRSVMFSNNYDMRKFPELYELLHRSTLNIDKQNRTVFHHIANLALTKGKTHAAK",
+       "YYMETILARLADYPQELADVINFQDEEGETALTIAARARSRRLVKALLDHGANPKIKNRDSRSAEDYILE",
+       "DERFRSSPVPAPNGGIGKASTSAAAEKPLFAPQLYFSEAARLCGGQALTDITSHMQSLARSFDAELQGKE",
+       "RDILQAKALLTNIHTEVTENGRSITAITNQAAPLEEKRRELEALQASLKTRVKDALKKGYIGWLEGELVR",
+       "EQRWENGELEGNEEEKAAVQALRDVPTGGQEVVQAEEEKLRWEIEEKRKRRAMFVEKFVRAQTEAGTSEQ",
+       "IAKYRKLVSAGLGGVSTNEVDELMNQLLEGLEEENDNQVYNTTAGESGPSSWVQ"]
+  },
+  { "name" : "MBP1_PUCGR",
+    "RefSeqID" : "XP_003327086",
+    "UniProtID" : "E3KED4",
+    "taxonomyID" : 418459,
+    "sequence" : [
+       "MAYGGSIQPLRPPSRESATLHLHQPDLTVTSPPLSLTHCPPCVYSHFTHTPTSLIVIQVSLHSLLDQETY",
+       "HLLPSRSPPTVSVRMGTTTIYKATYSGVPVLEMPCEGIAVMRRRSDSWLNATQILKVAGFDKPQRTRVLE",
+       "REIQKGTHEKIQGGYGKYQGTWVPLDRGIDLAKQYGVDHLLSALFNFQPSSNESPPLAPKHVTALSTRVK",
+       "VSKVSAASAARAARAVVPSLPSTSGLGGRNTNNSWSNFDSDNEPGLPPAASSRESNGNWATQSKLARSSN",
+       "LARARANINNSHPEDLPVPAPDQLQASPLPSMQTADPENDNSLTPSELSLPSRTPSPIEDLPLTVNTASS",
+       "QSTRNKGKSRDLPDDEDLSRGQKRKYDTSLVEDTSYSDGADDQYINGNPSNAASAKYAKLILDYFVSESS",
+       "QIPNFLNDPPSDFDPNVVIDDDGHTALHWACAMGRIKIIKLLLTCGADIFRANNAGQTALMRAVMFTNNH",
+       "DLRTFPELFESFSGSVINIDRTDRTVFHYVIDIALTKGKVPAARYYLETILSQLSEYPKELIDILNFQDE",
+       "DGETALTLAARCRSKKLVKILLDHGANPKTANRDGKSAEDYILEDDKFRALSPTPCSSGPIRQLDQNSPG",
+       "GTSNRSDFVDLVDPVPIDSNLIPQRSPNASPPHYSETGQRVTKQLLPEVTSMIELLATTFDTELQDKERD",
+       "LDHAVGLLSNIEKEYLEGQRKILNYERMLSDFGEKKLALGDLEKELNDKLGKRYRFGWEKYVRDEEERAR",
+       "RITEQRSKYLQELSIEDRKLLDSSNLRFADPSKQEVLMKLQADERENSDLLNLIRTNSTDVESECDLLRE",
+       "SVQKLSEERERLFKEFINLSSENTGGENEEDDGANHTSANTSRLNNYRKLISLGCGGIGLDEVDEVIESL",
+       "NEGIDVNELNDNGFLTEQDEELGNHQNYHNIHTQGR"]
+  },
+  { "name" : "MBP1_USTMA",
+    "RefSeqID" : "XP_011392621",
+    "UniProtID" : "A0A0D1DP35",
+    "taxonomyID" : 237631,
+    "sequence" : [
+       "MSGDKTIFKATYSGVPVYECIINNVAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQG",
+       "GYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPSAADSPPPAPKHTISTSNRSKKIIPADPGALGRS",
+       "RRATSIETESEVIGAAPNNVSEGSMSPSPSDISSSSRTPSPLPADRAHPLHANHALAGYNGRDANNHARY",
+       "ADIILDYFVTENTTVPSLLINPPPDFNPDMSIDDDEHTALHWACAMGRIRVVKLLLSAGADIFRVNSNQQ",
+       "TALMRATMFSNNYDLRKFPELFELLHRSILNIDRNDRTVFHHVVDLALSRGKPHAARYYMETMINRLADY",
+       "GDQLADILNFQDDEGETPLTMAARARSKRLVRLLLEHGADPKIRNKEGKNAEDYIIEDERFRSSPSRTGP",
+       "AGIELGADGLPVLPTSSLHTSEAGQRTAGRAVTLMSNLLHSLADSYDSEINTAEKKLTQAHGLLKQIQTE",
+       "IEDSAKVAEALHHEAQGVDEERKRVDSLQLALKHAINKRARDDLERRWSEGKQAIKRARLQAGLEPGALS",
+       "TSNATNAPATGDQKSKDDAKSLIEALPAGTNVKTAIAELRKQLSQVQANKTELVDKFVARAREQGTGRTM",
+       "AAYRRLIAAGCGGIAPDEVDAVVGVLCELLQESHTGARAGAGGERDDRARDVAMMLKGAGAAALAANAGA",
+       "P"]
+  },
+  { "name" : "MBP1_WALME",
+    "RefSeqID" : "XP_006957051",
+    "UniProtID" : "I4YGC0",
+    "taxonomyID" : 671144,
+    "sequence" : [
+       "MSAPPIYKACYSGVPVYEFNCKNVAVMKRRSDSWMNATQILKVANFDKPQRTRILEREVQKGTHEKVQGG",
+       "YGKYQGTWIPMERSVELARQYRIELLLDPIINYLPGPQSPPLAPKHATNVGSRARKSTAPAAQTLPSTSK",
+       "VFHPLSSTKHPAKLAAATNAKAEISDGEDASIPSSPSFKSNSSRTPSPIRINARKRKLEDEATIPSSAID",
+       "GSISYEDIILDYFISESTQIPALLIHPPSDFNPNMSIDDEGHTAMHWACAMGKVRVVKLLLSAGADIFRV",
+       "NHSEQTALMRSVMFSNNYDIRKFPQLYELLHRSTLNLDKHDRTVLHHIVDLALTKSKTHAARYYMECVLS",
+       "KLANYPDELADVINFQDDEGESALTLAARARSKRLVKLLLEHGADSKLPNKDGKTAEDYILEDERFRQSP",
+       "LLNSNHLRLHPPDTSIYAPPAHLFNSETSQNIANTSMSSVANLLESLAQSYDKEITQKERDYQQAQVILR",
+       "NIKTDIVEAKSNIEKMTIDSSEFEHLKHKLRELEMKLEEHSNDVYNKGWEEYSRNVDDPAIDAPSDNVQE",
+       "ECASLRNKIKDLQEKRISSMQELIKRQKEVGTGKKMSEYRKLISVGCGIPTTEIDAVLEMLLESLESENA",
+       "NKKAALASGISGALSSTSSAPSQATTSAPTGVATPGAPVPASSEKAGLLPPAPVMQ"]
+  }
+]
diff --git a/data/refTaxonomy.json b/data/refTaxonomy.json
new file mode 100644
index 0000000..4d28314
--- /dev/null
+++ b/data/refTaxonomy.json
@@ -0,0 +1,22 @@
+[
+  { "ID" : 227321,
+    "species" : "Aspergillus nidulans FGSC A4"},
+  { "ID" : 930090,
+    "species" : "Bipolaris oryzae ATCC 44560"},
+  { "ID" : 367110,
+    "species" : "Neurospora crassa OR74A"},
+  { "ID" : 559292,
+    "species" : "Saccharomyces cerevisiae S288C"},
+  { "ID" : 284812,
+    "species" : "Schizosaccharomyces pombe 972h-"},
+  { "ID" : 240176,
+    "species" : "Coprinopsis cinerea okayama7#130"},
+  { "ID" : 214684,
+    "species" : "Cryptococcus neoformans var. neoformans JEC21"},
+  { "ID" : 418459,
+    "species" : "Puccinia graminis f. sp. tritici CRL 75-36-700-3"},
+  { "ID" : 237631,
+    "species" : "Ustilago maydis 521"},
+  { "ID" : 671144,
+    "species" : "Wallemia mellicola CBS 633.66"}
+]
diff --git a/data/referenceDomainAnnotations.txt b/data/referenceDomainAnnotations.txt
new file mode 100644
index 0000000..c8d58d6
--- /dev/null
+++ b/data/referenceDomainAnnotations.txt
@@ -0,0 +1,115 @@
+ID	protein.ID	feature.ID	start	end	note
+# MBP1_SACCE
+NA	ref_pro_4	ref_ftr_1	4	102	APSES fold
+NA	ref_pro_4	ref_ftr_2	22	105	KilA-N
+NA	ref_pro_4	ref_ftr_4	108	122	low complexity
+NA	ref_pro_4	ref_ftr_4	236	241	low complexity
+NA	ref_pro_4	ref_ftr_4	279	307	low complexity
+NA	ref_pro_4	ref_ftr_4	700	717	low complexity
+NA	ref_pro_4	ref_ftr_4	700	717	low complexity
+NA	ref_pro_4	ref_ftr_5	394	423	Ankyrin
+NA	ref_pro_4	ref_ftr_5	427	463	Ankyrin
+NA	ref_pro_4	ref_ftr_5	512	541	Ankyrin
+NA	ref_pro_4	ref_ftr_6	381	547	Swi6 fold
+NA	ref_pro_4	ref_ftr_7	633	655	coiled coil
+# MBP1_ASPNI
+NA	ref_pro_1	ref_ftr_1	9	106	APSES fold
+NA	ref_pro_1	ref_ftr_2	26	109	KilA-N
+NA	ref_pro_1	ref_ftr_4	529	534	low complexity
+NA	ref_pro_1	ref_ftr_5	260	289	Ankyrin
+NA	ref_pro_1	ref_ftr_5	381	413	Ankyrin
+NA	ref_pro_1	ref_ftr_6	193	402	Swi6 fold
+NA	ref_pro_1	ref_ftr_7	509	572	coiled coil
+# MBP1_BIPOR
+NA	ref_pro_2	ref_ftr_1	8	106	APSES fold
+NA	ref_pro_2	ref_ftr_2	26	109	KilA-N
+NA	ref_pro_2	ref_ftr_4	134	152	low complexity
+NA	ref_pro_2	ref_ftr_4	267	278	low complexity
+NA	ref_pro_2	ref_ftr_4	670	685	low complexity
+NA	ref_pro_2	ref_ftr_5	266	295	Ankyrin
+NA	ref_pro_2	ref_ftr_5	387	416	Ankyrin
+NA	ref_pro_2	ref_ftr_6	253	421	Swi6 fold
+NA	ref_pro_2	ref_ftr_7	659	681	coiled coil
+NA	ref_pro_2	ref_ftr_7	500	590	coiled coil
+# MBP1_NEUCR
+NA	ref_pro_3	ref_ftr_1	14	114	APSES fold
+NA	ref_pro_3	ref_ftr_2	34	117	KilA-N
+NA	ref_pro_3	ref_ftr_4	130	141	low complexity
+NA	ref_pro_3	ref_ftr_4	253	266	low complexity
+NA	ref_pro_3	ref_ftr_4	514	525	low complexity
+NA	ref_pro_3	ref_ftr_4	554	564	low complexity
+NA	ref_pro_3	ref_ftr_4	601	618	low complexity
+NA	ref_pro_3	ref_ftr_4	620	629	low complexity
+NA	ref_pro_3	ref_ftr_4	636	652	low complexity
+NA	ref_pro_3	ref_ftr_4	658	672	low complexity
+NA	ref_pro_3	ref_ftr_4	725	735	low complexity
+NA	ref_pro_3	ref_ftr_4	752	771	low complexity
+NA	ref_pro_3	ref_ftr_5	268	297	Ankyrin
+NA	ref_pro_3	ref_ftr_5	390	419	Ankyrin
+NA	ref_pro_3	ref_ftr_6	270	426	Swi6 fold
+NA	ref_pro_3	ref_ftr_7	500	550	coiled coil
+# MBP1_SCHPO
+NA	ref_pro_5	ref_ftr_1	8	104	APSES fold
+NA	ref_pro_5	ref_ftr_2	25	113	KilA-N
+NA	ref_pro_5	ref_ftr_4	111	125	low complexity
+NA	ref_pro_5	ref_ftr_4	136	145	low complexity
+NA	ref_pro_5	ref_ftr_4	176	191	low complexity
+NA	ref_pro_5	ref_ftr_4	422	447	low complexity
+NA	ref_pro_5	ref_ftr_5	247	276	Ankyrin
+NA	ref_pro_5	ref_ftr_5	368	397	Ankyrin
+NA	ref_pro_5	ref_ftr_6	234	400	Swi6 fold
+NA	ref_pro_5	ref_ftr_7	457	538	coiled coil
+# MBP1_COPCI
+NA	ref_pro_6	ref_ftr_1	5	103	APSES fold
+NA	ref_pro_6	ref_ftr_2	23	106	KilA-N
+NA	ref_pro_6	ref_ftr_4	170	191	low complexity
+NA	ref_pro_6	ref_ftr_4	435	450	low complexity
+NA	ref_pro_6	ref_ftr_4	611	626	low complexity
+NA	ref_pro_6	ref_ftr_5	270	299	Ankyrin
+NA	ref_pro_6	ref_ftr_5	389	418	Ankyrin
+NA	ref_pro_6	ref_ftr_5	474	509	Ankyrin
+NA	ref_pro_6	ref_ftr_6	257	429	Swi6 fold
+NA	ref_pro_6	ref_ftr_7	500	570	coiled coil
+NA	ref_pro_6	ref_ftr_7	651	678	coiled coil
+# MBP1_CRYNE
+NA	ref_pro_7	ref_ftr_1	113	211	APSES fold
+NA	ref_pro_7	ref_ftr_2	131	215	KilA-N
+NA	ref_pro_7	ref_ftr_4	66	85	low complexity
+NA	ref_pro_7	ref_ftr_4	413	423	low complexity
+NA	ref_pro_7	ref_ftr_4	633	644	low complexity
+NA	ref_pro_7	ref_ftr_4	697	709	low complexity
+NA	ref_pro_7	ref_ftr_5	477	506	Ankyrin
+NA	ref_pro_7	ref_ftr_5	618	647	Ankyrin
+NA	ref_pro_7	ref_ftr_6	452	663	Swi6 fold
+# MBP1_PUCGR
+NA	ref_pro_8	ref_ftr_1	90	187	APSES fold
+NA	ref_pro_8	ref_ftr_2	107	190	KilA-N
+NA	ref_pro_8	ref_ftr_4	208	227	low complexity
+NA	ref_pro_8	ref_ftr_4	273	291	low complexity
+NA	ref_pro_8	ref_ftr_5	442	271	Ankyrin
+NA	ref_pro_8	ref_ftr_5	475	509	Ankyrin
+NA	ref_pro_8	ref_ftr_5	561	590	Ankyrin
+NA	ref_pro_8	ref_ftr_6	429	601	Swi6 fold
+NA	ref_pro_8	ref_ftr_7	827	863	coiled coil
+# MBP1_USTMA
+NA	ref_pro_9	ref_ftr_1	7	104	APSES fold
+NA	ref_pro_9	ref_ftr_2	24	107	KilA-N
+NA	ref_pro_9	ref_ftr_4	106	116	low complexity
+NA	ref_pro_9	ref_ftr_4	161	183	low complexity
+NA	ref_pro_9	ref_ftr_4	657	672	low complexity
+NA	ref_pro_9	ref_ftr_4	776	796	low complexity
+NA	ref_pro_9	ref_ftr_5	245	274	Ankyrin
+NA	ref_pro_9	ref_ftr_5	355	384	Ankyrin
+NA	ref_pro_9	ref_ftr_6	232	395	Swi6 fold
+NA	ref_pro_9	ref_ftr_7	581	609	coiled coil
+# MBP1_WALME
+NA	ref_pro_10	ref_ftr_1	6	103	APSES fold
+NA	ref_pro_10	ref_ftr_2	23	106	KilA-N
+NA	ref_pro_10	ref_ftr_4	149	162	low complexity
+NA	ref_pro_10	ref_ftr_4	171	188	low complexity
+NA	ref_pro_10	ref_ftr_4	618	628	low complexity
+NA	ref_pro_10	ref_ftr_4	634	660	low complexity
+NA	ref_pro_10	ref_ftr_5	250	279	Ankyrin
+NA	ref_pro_10	ref_ftr_5	369	398	Ankyrin
+NA	ref_pro_10	ref_ftr_6	237	409	Swi6 fold
+NA	ref_pro_10	ref_ftr_7	461	585	coiled coil