autoBIGS.engine/README.md

autoMLST

A CLI/library for rapidly performing MLST typing via accessing pubMLST and InstitutPasteur MSLT databases.

Components

automlst.cli

The command line interface, sets up very minimal and mostly makes calls to the library. Uses argparse and is split into two parts:

• automlst info: Provides user information on available databases to pull from, and the schemas available.
• automlst exactmatch: Provides users the ability to request exact match results from a given database and schema