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3e3898334f
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Began implementing LazyPersistentCachedBIGSdbMLSTProfiler
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2025-01-27 22:03:49 +00:00 |
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ba1f0aa318
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Fixed potential memory leak
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2025-01-27 22:02:52 +00:00 |
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1773bb9dcb
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Updated naming (again).
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2025-01-22 21:05:19 +00:00 |
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53e74af20a
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Refactoring project name to autoBIGSst.engine
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2025-01-22 18:24:04 +00:00 |
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b89f24a3fa
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Fixed issue where multiple allele identifiers were not returned in output.
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2025-01-17 17:04:22 +00:00 |
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e7c8c5bcf9
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Changed allele CSV output to non-lists
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2025-01-17 16:56:52 +00:00 |
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7ea7ead46a
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Moved ABIF code to separate project
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2025-01-17 14:27:25 +00:00 |
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a3c864b565
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Refactored code layout
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2025-01-16 21:54:52 +00:00 |
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4fe0f0f287
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Added stage for publishing to test.pypi.org when the tag a version number.
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2025-01-16 21:22:49 +00:00 |
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5449ae0c68
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Moved CLI to automlst.cli repo
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2025-01-10 17:22:12 +00:00 |
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e634647774
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Added untested partial matching
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2025-01-10 16:12:56 +00:00 |
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f20a656f45
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Fixed multiple string typing failure handling
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2025-01-10 16:00:27 +00:00 |
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0c0a2c9d4c
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Finished adding partial allele matching
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2025-01-10 15:25:31 +00:00 |
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03fbbe542e
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allele profiling partial matching works
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2025-01-09 21:44:28 +00:00 |
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9589761ddd
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Now tracks failed profilings
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2025-01-09 17:27:15 +00:00 |
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2843d0d592
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Added tests to test continuous MLST despite failure
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2025-01-09 17:04:53 +00:00 |
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463e320386
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Updated BIGSdb API to be more tolerant towards failures
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2025-01-09 16:49:12 +00:00 |
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022200f197
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Refactored class name
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2025-01-09 16:22:50 +00:00 |
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9b8e448512
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Completed updating CLI to be more organized with bettert error messages
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2025-01-09 07:39:18 +00:00 |
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42d0f56b18
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Moved to a general BIGSdb implementation
Updated tests
Removed ABIF UI for the time being
Began updating CLI
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2025-01-08 21:32:10 +00:00 |
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645357ac58
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Added unit tests for pubMLST MLST profiling
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2025-01-08 17:34:30 +00:00 |
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424beeb559
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Refactored CLI naming
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2025-01-08 16:55:55 +00:00 |
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d580402523
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began adding PubMLST support
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2025-01-08 16:54:57 +00:00 |
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ad28d9bf20
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Added additional test for fully automatic typing based on sequence
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2025-01-08 16:31:06 +00:00 |
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c3a492fa8f
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restructured MLST profiling classes
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2025-01-08 16:24:42 +00:00 |
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e9ffab5526
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Removed unused code
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2025-01-08 15:15:21 +00:00 |
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02985d5e37
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Copied over most code from another of my projects
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2025-01-08 15:14:06 +00:00 |
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