Refactoring project name to autoBIGSst.engine

src/autobigsst/engine/data/local/csv.py

@@ -2,7 +2,7 @@ import csv
 from os import PathLike
 from typing import AsyncIterable, Mapping, Sequence, Union
 
-from automlst.engine.data.structures.mlst import Allele, MLSTProfile
+from autobigsst.engine.data.structures.mlst import Allele, MLSTProfile
 
 
 def dict_loci_alleles_variants_from_loci(alleles_map: Mapping[str, Sequence[Allele]]):

src/autobigsst/engine/data/local/fasta.py

@@ -3,7 +3,7 @@ from io import TextIOWrapper
 from typing import Any, AsyncGenerator, Generator, Iterable, Sequence, Union
 from Bio import SeqIO
 
-from automlst.engine.data.structures.genomics import NamedString
+from autobigsst.engine.data.structures.genomics import NamedString
 
 async def read_fasta(handle: Union[str, TextIOWrapper]) -> AsyncGenerator[NamedString, Any]:
     fasta_sequences = asyncio.to_thread(SeqIO.parse, handle=handle, format="fasta")

src/autobigsst/engine/data/remote/databases/bigsdb.py

@@ -5,9 +5,9 @@ from typing import Any, AsyncGenerator, AsyncIterable, Collection, Generator, It
 
 from aiohttp import ClientSession, ClientTimeout
 
-from automlst.engine.data.structures.genomics import NamedString
-from automlst.engine.data.structures.mlst import Allele, PartialAllelicMatchProfile, MLSTProfile
-from automlst.engine.exceptions.database import NoBIGSdbExactMatchesException, NoBIGSdbMatchesException, NoSuchBIGSdbDatabaseException
+from autobigsst.engine.data.structures.genomics import NamedString
+from autobigsst.engine.data.structures.mlst import Allele, PartialAllelicMatchProfile, MLSTProfile
+from autobigsst.engine.exceptions.database import NoBIGSdbExactMatchesException, NoBIGSdbMatchesException, NoSuchBIGSdbDatabaseException
 
 class BIGSdbMLSTProfiler(AbstractAsyncContextManager):