8b379198ec 
					 
					
						
						
							
							Prepping for implementation of quick and dirty GUI  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/splitmsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-11 16:13:07 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						43758c45f8 
					 
					
						
						
							
							Changed Jenkins pipeline to use mamba  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/splitmsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-11 13:00:04 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						f74fea0b24 
					 
					
						
						
							
							Updated development environment to include build tools  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/splitmsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-11 12:58:38 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						eccb08153e 
					 
					
						
						
							
							Renamed project to "SplitMSA" and added pipeline file  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/splitmsa/pipeline/head There was a failure building this commit 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-11 12:39:04 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						419adcd098 
					 
					
						
						
							
							Updated translation mechanism.  
						
						 
						
						... 
						
						
						
						Added failsafe for overlapping genes where length is not equal to a multiple of 3.
Added codon ambiguity detection which translates to "X" in aa sequence. 
						
						
					 
					
						2023-03-30 16:16:00 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						016152970c 
					 
					
						
						
							
							Regenerated .gitignore.  
						
						 
						
						
						
						
					 
					
						2023-03-30 16:13:28 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						0c5f188b80 
					 
					
						
						
							
							Completed translation mechanism  
						
						 
						
						
						
						
					 
					
						2023-03-28 15:56:50 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						03d87a670f 
					 
					
						
						
							
							Incomplete translation mechanism  
						
						 
						
						
						
						
					 
					
						2023-03-27 16:23:12 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						89cde939b0 
					 
					
						
						
							
							Added problem cataloging.  
						
						 
						
						
						
						
					 
					
						2023-03-22 15:13:37 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e5ead8f197 
					 
					
						
						
							
							Reduced verbosity caused by inherit off-by-one errors, cleared up logging.  
						
						 
						
						
						
						
					 
					
						2023-03-22 14:38:45 -05:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						99f75942ac 
					 
					
						
						
							
							Initial commit.  
						
						 
						
						
						
						
					 
					
						2023-03-22 14:30:53 -05:00