ydeng/splitmsa
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Removed "Gooey" as dependency and fixed "setup.cfg"
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Harrison Deng 2023-04-20 15:25:55 -05:00
parent 8b379198ec
commit cf9df14fce
4 changed files with 6 additions and 5 deletions
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5
Jenkinsfile vendored
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@ -12,6 +12,11 @@ pipeline {
sh "python -m build" sh "python -m build"
} }
} }
stage("test") {
steps {
sh "pip install dist/*.whl"
}
}
stage("publish") { stage("publish") {
when { when {
branch '**/master' branch '**/master'

1
environment.yml
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@ -6,5 +6,4 @@ dependencies:
- pytest=7.2.2 - pytest=7.2.2
- twine=4.0.2 - twine=4.0.2
- biopython=1.81 - biopython=1.81
- gooey=1.0.8.1
- python=3.9 - python=3.9

3
setup.cfg
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@ -5,8 +5,7 @@ version = 0.0.1
[options] [options]
packages = splitmsa packages = splitmsa
install_requires = install_requires =
gooey Bio ==1.81; python_version == "3.9"
Bio; python_version == "3.9"
[options.entry_points] [options.entry_points]
console_scripts = console_scripts =

2
splitmsa/splitmsa.py
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@ -14,7 +14,6 @@ import os
from Bio import SeqIO, SeqRecord from Bio import SeqIO, SeqRecord
from Bio.Seq import Seq from Bio.Seq import Seq
import csv import csv
from gooey import Gooey
def read_genes_from_csv(batch_genes_csv_path: str): def read_genes_from_csv(batch_genes_csv_path: str):
@ -309,7 +308,6 @@ def run(args):
info(f"Completed gene {gene_name} ({start} - {end})") info(f"Completed gene {gene_name} ({start} - {end})")
@Gooey
def main(): def main():
parser = argparse.ArgumentParser( parser = argparse.ArgumentParser(
prog="splitmsa", prog="splitmsa",