From cf9df14fce305c35d2a765fb1e778760b01ce299 Mon Sep 17 00:00:00 2001
From: Harrison <yunyangdeng@gmail.com>
Date: Thu, 20 Apr 2023 15:25:55 -0500
Subject: [PATCH] Removed "Gooey" as dependency and fixed "setup.cfg"

---
 Jenkinsfile          | 5 +++++
 environment.yml      | 1 -
 setup.cfg            | 3 +--
 splitmsa/splitmsa.py | 2 --
 4 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index c537062..d0deb4d 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -12,6 +12,11 @@ pipeline {
                 sh "python -m build"
             }
         }
+        stage("test") {
+            steps {
+                sh "pip install dist/*.whl"
+            }
+        }
         stage("publish") {
             when {
                 branch '**/master'
diff --git a/environment.yml b/environment.yml
index 5a5d9a8..9ebef1d 100644
--- a/environment.yml
+++ b/environment.yml
@@ -6,5 +6,4 @@ dependencies:
   - pytest=7.2.2
   - twine=4.0.2
   - biopython=1.81
-  - gooey=1.0.8.1
   - python=3.9
diff --git a/setup.cfg b/setup.cfg
index 5cff0a3..ad1f310 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -5,8 +5,7 @@ version = 0.0.1
 [options]
 packages = splitmsa
 install_requires =
-    gooey
-    Bio; python_version == "3.9"
+    Bio ==1.81; python_version == "3.9"
 
 [options.entry_points]
 console_scripts =
diff --git a/splitmsa/splitmsa.py b/splitmsa/splitmsa.py
index 30bb18e..57c11c1 100755
--- a/splitmsa/splitmsa.py
+++ b/splitmsa/splitmsa.py
@@ -14,7 +14,6 @@ import os
 from Bio import SeqIO, SeqRecord
 from Bio.Seq import Seq
 import csv
-from gooey import Gooey
 
 
 def read_genes_from_csv(batch_genes_csv_path: str):
@@ -309,7 +308,6 @@ def run(args):
         info(f"Completed gene {gene_name} ({start} - {end})")
 
 
-@Gooey
 def main():
     parser = argparse.ArgumentParser(
         prog="splitmsa",