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Harrison Deng
fd34c4ea44 Bumped version number
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2023-06-28 14:20:15 +00:00
Harrison Deng
58ea9ed2d0 Added untested '-p' option.
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2023-06-28 14:19:53 +00:00
Harrison Deng
2d1d69f95f Added automatic sample name replacement
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2023-06-28 05:51:52 +00:00
Harrison Deng
02f52560eb Bumped version number
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2023-06-27 20:26:48 +00:00
Harrison Deng
9245b3f68e Fixed '--only' issue
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2023-06-27 20:20:59 +00:00
Harrison Deng
c25f4ab9a1 Updated the 'README.md'
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2023-06-27 14:40:33 +00:00
Harrison Deng
565d778907 Merge branch 'main' of https://git.reslate.systems/ydeng/modvcfsamples
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2023-06-27 14:22:36 +00:00
Harrison Deng
4d757e8a8d Added CLI test in 'Jenkinsfile'
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2023-06-27 14:19:06 +00:00
Harrison Deng
8cd09bfb41 Updated pipeline and formatted code
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Pipeline now looks for correct unit test file
 2023-06-27 14:15:03 +00:00
Harrison Deng
58adf3efe8 Added required test resource
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2023-06-27 14:03:33 +00:00
Harrison Deng
f1aaaddc0c Changed build environment and project metadata
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Now includes 'vcfpy' instead of 'pyvcf'
 2023-06-27 13:59:14 +00:00
Harrison Deng
7bae01b1af Implemented normalizing genotype
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2023-06-27 06:15:32 +00:00
Harrison Deng
6449b0b666 Update 'environment.yml'
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2023-06-27 06:14:43 +00:00
Harrison Deng
08ba073ef9 Tested and completed adding call sample filtering
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2023-06-26 21:07:55 +00:00
Harrison Deng
515d790844 Basic filtering system and tests completed
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2023-06-26 17:20:40 +00:00
Harrison Deng
f2bdbaa0b0 Initial commit 2023-06-22 16:35:31 +00:00